Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_A23
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979... 103 1e-22
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254... 96 2e-20
03_05_0161 + 21400580-21401695 30 1.8
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136... 29 4.1
01_05_0630 - 23811576-23811728,23812473-23812561,23812644-238127... 29 4.1
08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492... 28 7.1
04_04_0387 + 24869594-24871480 27 9.4
>02_04_0659 -
24797477-24797533,24797614-24797726,24797814-24797943,
24798727-24798828,24798951-24798953
Length = 134
Score = 103 bits (247), Expect = 1e-22
Identities = 57/135 (42%), Positives = 77/135 (57%)
Frame = -3
Query: 564 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 385
MPF R+VE GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT
Sbjct: 1 MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58
Query: 384 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 205
++ + KA +A + KW S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 59 KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118
Query: 204 RARTAVFKSLKVKAA 160
A LK AA
Sbjct: 119 GAIRQELAKLKKTAA 133
>04_04_0506 -
25723809-25724299,25725082-25725237,25725316-25725445,
25726484-25726585,25726630-25726671
Length = 306
Score = 96.3 bits (229), Expect = 2e-20
Identities = 50/117 (42%), Positives = 70/117 (59%)
Frame = -3
Query: 561 PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 382
PF R+VE GRVALV G G+LV +VDV+DQ RALVD P + R QI +L LT +
Sbjct: 15 PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72
Query: 381 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 211
+ + KA +A + KW S W +KL +++RA + D+DRFK+ A++K
Sbjct: 73 IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129
>03_05_0161 + 21400580-21401695
Length = 371
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 401 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 496
SWF C G P P P +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339
>04_03_0611 -
18011469-18012563,18012756-18012920,18013542-18013639,
18014541-18015498
Length = 771
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = +2
Query: 80 GFLVXFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 259
G +V +L R F A + A FK+L + R L +NL S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379
>01_05_0630 -
23811576-23811728,23812473-23812561,23812644-23812764,
23812867-23812992,23813399-23813505,23813742-23813856,
23815071-23815274
Length = 304
Score = 28.7 bits (61), Expect = 4.1
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Frame = +2
Query: 53 RHKNNYFLAGFLVXFLVRTFF--AAALGIF-FLPKVPARAAFTFKLLNTAVLARFLL--- 214
R N+ +L G + F + + A+LGI LPK A A+ LL T + + L
Sbjct: 123 RTANSLWLDGRTIHFSINAWVLVVASLGILPILPKHIASKAYRLSLLGTICSSAYSLYVT 182
Query: 215 -------TRAAVNLNLS*SVICARF-SLFANFWAH*LSVHFSLSLASVHAFLTRRVGAVN 370
AA+ L ++ F L + +VH+ ++L V L + V
Sbjct: 183 YGKPRAWNMAAIQPWLQSIIVAKDFVHLMFSLMMFTSNVHYKIALLPV---LCWALDHVA 239
Query: 371 AYLRRNFVRWSWFKRI 418
+LRRNF R S ++++
Sbjct: 240 RFLRRNFARSSLYRQL 255
>08_02_0128 -
12848227-12848619,12848699-12848827,12849108-12849279,
12849336-12849488,12850017-12850271,12850846-12851000,
12853319-12853456,12853545-12853715,12853878-12854063,
12854169-12854290,12855617-12855752,12856108-12856203,
12856294-12856356,12856846-12856993,12857324-12857514,
12857916-12857989,12858039-12858171,12858299-12858460,
12861649-12861745,12861866-12861962,12863994-12864141
Length = 1072
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 23 KSRLSHITCRRHKNNYFLAGFLVXFLV 103
+SRL+H R +NY LA FL +LV
Sbjct: 438 RSRLAHFLVNRALSNYELASFLRWYLV 464
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -3
Query: 318 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 139
+EK+ + QW Q + + +K ++ + + A+ + NR R K ++++ ARA T
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556
Query: 138 K 136
K
Sbjct: 557 K 557
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,015
Number of Sequences: 37544
Number of extensions: 340109
Number of successful extensions: 985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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