Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_A22
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945 31 0.82
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375... 30 1.4
06_01_0942 - 7242389-7243160,7243293-7243822,7245878-7246095,724... 30 1.4
08_01_0678 + 5878291-5878461,5879722-5879984,5881658-5881729,588... 29 1.9
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 29 2.5
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 4.4
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 28 4.4
12_01_0042 + 337131-337612,338727-338898,338996-339204,339414-33... 27 7.7
>08_01_0256 + 2102044-2102883,2104208-2104741,2104838-2104945
Length = 493
Score = 30.7 bits (66), Expect = 0.82
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 186 ATRYFCF-SEHFPHDVCKLSGIHFLKSFPS 272
AT F F ++H+P D CK + + FLKS S
Sbjct: 386 ATDVFMFDTKHYPRDECKRAALFFLKSISS 415
>07_01_0504 +
3756714-3757054,3757205-3757259,3757403-3757477,
3757638-3757729,3757914-3757995,3758138-3758221,
3758326-3758445
Length = 282
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -3
Query: 253 KWIPESLQTSCGKCSEK--QKYLVAKFVHAIK-DKMPDEFDIL 134
KW E+L T+C +C+ + QK + + +K K P EFDIL
Sbjct: 209 KWEWENLVTACSRCNSRKGQKTVEQANMKLLKVPKAPKEFDIL 251
>06_01_0942 -
7242389-7243160,7243293-7243822,7245878-7246095,
7246380-7246425
Length = 521
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 515 TYLIRLTIGNLNELIRFSEATLINEVRPRSHRSGCSGGR 399
T L R+ +G + ++ + A L+ RPR+ S SGGR
Sbjct: 370 TVLQRIGVGMVLSIVAMAVAALVEARRPRAAASSSSGGR 408
>08_01_0678 +
5878291-5878461,5879722-5879984,5881658-5881729,
5881807-5881878,5882092-5882166,5882443-5882517,
5883623-5883667,5883767-5883831,5883919-5884203,
5884234-5884298,5884435-5884636,5884735-5884905,
5885237-5885355,5886699-5886909,5887007-5887238,
5887325-5887475,5887547-5887945
Length = 890
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 210 LKSRSI*WPSSSTPSRIRCLTNSISCANCTIPKGNTPRTLINSSKLTDIKL*FNSF 43
L+ I P ++ S++ L +S++ NC I T N LTD+ L +N+F
Sbjct: 195 LQGNKIEGPIPASLSKLVKLNSSLTLRNCNISDKLTSVDFSNFKNLTDLNLVWNNF 250
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 84 NLSRFSVY-SPLGSCSLRRISNSSGILSLMAWTNLATRYFCFSEHFPHDVCKLSG 245
+LSRF ++ S L S RR + G+ + W L+ RY C E VC L+G
Sbjct: 49 SLSRFPLFFSSLLVFSARRERDLVGVSA--CWRGLSRRYKCSPERTVLSVCMLTG 101
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 84 NLSRFSVYSPLGSCSLRRISNSSGILSLMAWTNLATRYFCFS-EHFPHDVCKLSGIHFLK 260
NLS G CSL+R+ S G LS + +LA+ C S + P + +L + +L
Sbjct: 664 NLSCLESLEMAGCCSLQRLPESFGGLSKLCSLSLAS---CSSLQRLPDYIGELCSLEYLN 720
Query: 261 SFPSAVHFPLSL 296
+ + P SL
Sbjct: 721 ISHAHLELPDSL 732
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 256 KKWIPESLQTSCGKCS 209
K WIP+ L TS GKC+
Sbjct: 37 KHWIPQDLATSSGKCA 52
>12_01_0042 +
337131-337612,338727-338898,338996-339204,339414-339572,
339914-340262
Length = 456
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 79 RGIYQGSRCIPLWDRAVCAGYRIRQASYP*WRGRTWPLDTSAFQST 216
R +Y G +C ++D C Y Y WR + + F +T
Sbjct: 120 RPLYSGLKCSFIFDEVACDKYGRNDTKYQHWRWQPHGCNLPRFNAT 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,902
Number of Sequences: 37544
Number of extensions: 239587
Number of successful extensions: 701
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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