Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A21
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   113   2e-26
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   2.2  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   2.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.8  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.1  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   8.9  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  113 bits (272), Expect = 2e-26
 Identities = 56/117 (47%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
 Frame = -3

Query: 575 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 402
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 401 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRYKDI 231
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPR + +
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTL 120



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 24/46 (52%), Positives = 31/46 (67%)
 Frame = -2

Query: 162 RVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 25
           R   DG + IKV LD     T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 143 RQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188



 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
 Frame = -1

Query: 265 LTNKRGHATRTLTSVYDAILEDLVFPAEIVGKRI-QGQVGRLT 140
           +T KR  + RTLT+V++AILED+VFP EI+GKR  Q   GR T
Sbjct: 110 VTQKRPRS-RTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKT 151


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +1

Query: 283 LGLGRILRSPTKTTCLPLNFFSSSRTS 363
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 296 LPKPSHKTRVANKQKRPRYKDIDLCVRCYPRGLGLPC 186
           L   S +T V  ++++   +++D C  C  RGL + C
Sbjct: 96  LETESQQTPVKRRRRKATIRNVDYCSACGGRGLFICC 132


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -3

Query: 413 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 321
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 310  ETVRSCLSPATKPVLLTNKRGHA 242
            E+ +  ++ +TKPV +T+K GH+
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHS 1091


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 219 YTEVNVLVAWPLLFVSNTGFVAGLRQDLTVSNKDYMFTTELLFELTD 359
           +TE  V   + L  VS    V    +D  + N  YMFT + L+E TD
Sbjct: 146 FTETLVYDIYTLCLVSWHHHVFSHIRDSLLQNLLYMFTKKRLYEPTD 192


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +2

Query: 143  EPSNLTLYALAYDL 184
            EP +L  YALAYDL
Sbjct: 1961 EPDSLLFYALAYDL 1974


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +2

Query: 98  IVVCWFLSKCTLMSCEPSNLTLYALAYDLSREDQVLE 208
           +  CW+L    +   EP+N   +    D++  ++ L+
Sbjct: 843 VTACWYLFYVAVQQIEPTNSQYFLRTLDITLNNEKLK 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,152
Number of Sequences: 5004
Number of extensions: 50785
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)