Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A18
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.5  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    27   2.5  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   3.3  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   5.8  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.8  

>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 348 PVLFRIVIIKSFLCVITS*RCPIDTGLMYGLVY 250
           P+L ++V I  FLC+     C   + L+ GL Y
Sbjct: 157 PILLKLVSIIRFLCLTMKGHCATVSQLLLGLKY 189


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 596 AGHTMKIIF*AIFLHFGLHYWSFSKD 673
           AG  ++ IF  IFL  GL  W FS +
Sbjct: 477 AGKILQWIFQTIFLRLGLGVWPFSSE 502


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 310 QKRFYYNYSEKDGEKKTLLKTLYNSSICN*RPAPA 414
           +KR + NY+EK  ++K  L  +++ S     P+P+
Sbjct: 489 KKRLFVNYAEKREDRKKRLSAIFSQSYPPVVPSPS 523


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 544 CVLQIRSTLLYSIINSFRRAHDENNILGNFF 636
           C  ++ STL++ +IN+ +     N +L N F
Sbjct: 383 CTHKLASTLIFKLINNKQEPESRNLLLKNLF 413


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 277 VDRASLGGDNAQKRFYYNYSEKDGEKKTLLKTL 375
           ++++S+  +NA+++ Y     K G+KK  L+ +
Sbjct: 183 IEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVI 215


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 61  IINMSRTCLDNKVQWSVVVKLVSSRTIIDIVN*PPLMSYHLFMVKNCHR 207
           +++    CL+ + Q    V  +S R  + +   P L  YH  +V   HR
Sbjct: 408 VLDTCPLCLNYETQPLAPVISLSHRAYVSLPTQPELAKYHCLIVPTGHR 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,900
Number of Sequences: 5004
Number of extensions: 57385
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)