Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A18
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95310-1|CAB08561.1|  444|Caenorhabditis elegans Hypothetical pr...    31   0.77 
AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine r...    29   2.3  
Z83221-4|CAB05704.1|  298|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U61954-14|AAK29805.2|  352|Caenorhabditis elegans Him-three para...    28   7.1  

>Z95310-1|CAB08561.1|  444|Caenorhabditis elegans Hypothetical
           protein H40L08.1 protein.
          Length = 444

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
 Frame = -3

Query: 414 SRSGPLVTYRTIVECFQ*GFLFPVLFRIVIIKSFLCVITS*RCPIDTGLM--YGLVYSKH 241
           SR   L  Y +IV+     F FPV   +++I          R P+ T +       + ++
Sbjct: 79  SRRAVLPRYHSIVQFLAQFFTFPVRLPLIVINFVYSFFFGPRAPVYTHIFDYISQEFPEY 138

Query: 240 IVWMTKIYYWIPMTVLYHK*MIRHERWLINYIY 142
                 ++Y   +  L +    +H +WL+ YI+
Sbjct: 139 DGQKKNVFYKHQLQSLRNDLPTKHWKWLVTYIH 171


>AC025716-13|AAL32239.1|  289|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 64 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -3

Query: 333 IVIIKSFLCVITS*R-CPIDTGLMYGLVYSKHIVWMTKI 220
           ++I+ +FL V+ S   C ++  L++ + YSK I W +++
Sbjct: 5   VIILNNFLSVVFSQTTCILNFYLLFSIFYSKRIAWKSEL 43


>Z83221-4|CAB05704.1|  298|Caenorhabditis elegans Hypothetical
           protein C49A1.6 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 322 YYNYSEKDGEKKTLLKTLYNSSICN*RPAPAALGFLTKISKIFDVDLFKKIK 477
           Y+N++EK    +T + T Y+S      P     GF   I K+F++     IK
Sbjct: 36  YFNFTEKTATWETCITTCYSS------PGCIVAGFEDGICKLFEIGSISTIK 81


>U61954-14|AAK29805.2|  352|Caenorhabditis elegans Him-three paralog
           protein 1 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 334 NSYNKIFFVRYHLLKMPDRHGVNVRTGLLKTYCLDDENILL 212
           +SY     ++ HL K+ DRHG N    L K++  +D +  L
Sbjct: 253 DSYEAELTLKRHLDKVSDRHGFNPVNVLYKSFNSEDSDTSL 293


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,781
Number of Sequences: 27780
Number of extensions: 310955
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)