Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A15
         (806 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    30   1.7  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    30   1.7  
AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine re...    29   5.2  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    28   6.8  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    28   6.8  

>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug
           resistance related protein2 protein.
          Length = 1525

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 541 NFILLVLRFAWICVMLIKSIIMFIVRIFL 455
           ++ +  + F+WIC   + S+I F+V ++L
Sbjct: 516 SYFMAAIVFSWICAPFLASVISFVVYVYL 544


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 2 protein.
          Length = 1525

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -2

Query: 541 NFILLVLRFAWICVMLIKSIIMFIVRIFL 455
           ++ +  + F+WIC   + S+I F+V ++L
Sbjct: 516 SYFMAAIVFSWICAPFLASVISFVVYVYL 544


>AF016665-8|AAC71178.1|  324|Caenorhabditis elegans Serpentine
           receptor, class h protein250 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 127 LIKIRLFLFHNETVINFLVAQFSLFNT 207
           L+ I +F +HN+ + NF++  FS F T
Sbjct: 259 LLYIVIFKYHNQILNNFIIILFSCFGT 285


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +1

Query: 547 IMSSLT*FLNIFYRRLKLVIDLNKNIVQIKTNLSTS 654
           ++SS+  + + FY+R+  ++  + N +Q++ N+S S
Sbjct: 7   VLSSVLDYASKFYKRMSSLVFFSANSIQVQMNISQS 42


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 248 FCINQQHFCIVAH*VLNKENCA-TRKFITVSL*NKNKRILINCLSNS 111
           FC   +++CI +  V N  +C  TR  ++     KN+R L++C+ NS
Sbjct: 38  FC-ETENYCIKSWIVANGADCLNTRTDLSDRQCQKNRRGLVSCICNS 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,902
Number of Sequences: 27780
Number of extensions: 285189
Number of successful extensions: 641
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)