Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A13
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-7|CAA86760.2|  473|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    30   2.3  
U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine rece...    28   9.2  

>Z46791-7|CAA86760.2|  473|Caenorhabditis elegans Hypothetical
           protein C09G5.1 protein.
          Length = 473

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/70 (22%), Positives = 35/70 (50%)
 Frame = +1

Query: 55  YTKKNTWETGL*QIVKFSFMFQIHIKIHSMSNTLFLSTLTLGALFSFFINLSAILSSISW 234
           YTK++ + TG+       F     I  H + + +  S + + + FSF++++ A+   +S 
Sbjct: 223 YTKRDKYATGIWSSAVAEFHVDREITHHIIQSYIPTSLIVIISWFSFWLDVEAVPGRVSL 282

Query: 235 PVASLYSANT 264
            + +L +  T
Sbjct: 283 SITTLLTLAT 292


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 406 VCVSTIRMLPKSKRLMLRTMANLTGTQLLCQFCRRKIMKSHLKGF 272
           VC + +   PK+K+ M+     +TG  ++CQF + ++M     GF
Sbjct: 129 VCCTKLPTCPKTKKTMVNF---ITGKPIMCQFKQGRVMPCPENGF 170


>U80444-3|AAB37789.1|  326|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 14 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 196 FINLSAILSSISWPVASLYSANTFF 270
           F+N SA+L +I W    +YS N+FF
Sbjct: 45  FLN-SAVLGTILWRCREVYSTNSFF 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,342,478
Number of Sequences: 27780
Number of extensions: 257876
Number of successful extensions: 874
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)