Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A12
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   178   8e-46
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   178   8e-46
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    28   1.7  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    27   2.2  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  178 bits (433), Expect = 8e-46
 Identities = 81/135 (60%), Positives = 99/135 (73%)
 Frame = -2

Query: 770 VRVIAHTQMXLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDC 591
           VRV+AHTQ+      QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID 
Sbjct: 158 VRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDV 217

Query: 590 IXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 411
           I           T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT+
Sbjct: 218 IGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQ 277

Query: 410 MNKKIYRIGTRNPQK 366
           +N KIYRIG  +  K
Sbjct: 278 LNSKIYRIGAGDDAK 292



 Score =  125 bits (302), Expect = 6e-30
 Identities = 56/83 (67%), Positives = 67/83 (80%)
 Frame = -3

Query: 343 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 164
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 163 KINLKFIDTSSKFGHGRFQTPAD 95
            ++LK+IDT+SKFGHGRFQTPA+
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAE 375


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  178 bits (433), Expect = 8e-46
 Identities = 81/135 (60%), Positives = 99/135 (73%)
 Frame = -2

Query: 770 VRVIAHTQMXLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDC 591
           VRV+AHTQ+      QKKAH+MEIQ+NGG++ DKV+WAREH EK + + S F Q+EMID 
Sbjct: 158 VRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDV 217

Query: 590 IXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTE 411
           I           T+RW TK+LPRKTH+GLRKVACIGAWHP+ V +TVARAG  GY HRT+
Sbjct: 218 IGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQ 277

Query: 410 MNKKIYRIGTRNPQK 366
           +N KIYRIG  +  K
Sbjct: 278 LNSKIYRIGAGDDAK 292



 Score =  125 bits (302), Expect = 6e-30
 Identities = 56/83 (67%), Positives = 67/83 (80%)
 Frame = -3

Query: 343 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALE 164
           NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  HT R ALE
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALE 352

Query: 163 KINLKFIDTSSKFGHGRFQTPAD 95
            ++LK+IDT+SKFGHGRFQTPA+
Sbjct: 353 PVSLKWIDTASKFGHGRFQTPAE 375


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 447 SCWSERLSSPY*NEQENLSYWNKESTKRMAKLLKTMHLLSMTCLRNPLH 301
           S +   L S Y   +  L  W++E  KR+ KLL  M L  + C +  +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/65 (23%), Positives = 32/65 (49%)
 Frame = +3

Query: 270 TSP*WGKPPIGVMDFSDKSYSVDALFLITLPSFLWIPCSNTIDFLVHFSTVMITFLTSTS 449
           T+P +    + + D+      +D + + T  SF+W  C   +  L  F   ++T++ ST+
Sbjct: 131 TAPPYWDTTMVIPDYGSNEIYIDGMSVGTGFSFVWSAC---VAILFPFVGFLVTYVLSTT 187

Query: 450 YSERH 464
           +  R+
Sbjct: 188 HLGRY 192


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 707 MEIQLNGGTIEDKVKWAREH 648
           M +Q  G TI    KW REH
Sbjct: 46  MPVQYKGQTISASHKWTREH 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,249,852
Number of Sequences: 5004
Number of extensions: 68184
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)