Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_A10
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 44 3e-05
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 31 0.25
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 31 0.25
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 30 0.33
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 29 0.58
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.77
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 1.0
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 2.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 27 2.4
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 2.4
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 2.4
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 2.4
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.1
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 4.1
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 4.1
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 7.2
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 7.2
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 7.2
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 7.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 9.5
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 25 9.5
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 9.5
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 44.0 bits (99), Expect = 3e-05
Identities = 40/158 (25%), Positives = 77/158 (48%)
Frame = -1
Query: 800 KXQLEEEKKISLSIRIKPLTIEXLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYD 621
K QL+ K+ R E + L K QE E K E ++ E+ +K+Q+ +
Sbjct: 601 KKQLKLAKEEERQRREAERLAEQAAQKALEAKRQE--EARKKREEQRLKREQEKKQQELE 658
Query: 620 LKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDL 441
++ +E+QKQ+ R K LKK EA K + ++ + E+R+ ++KL + +
Sbjct: 659 RQKREEKQKQKEREKKLKK-QQQEADREKMAREQRLREEEEKRI-LEERKRREKLDKEEE 716
Query: 440 EKLNKDFLEKVWQERAEQFGGRQKARLPKWFGERPGKK 327
E+ ++ LEK +E+ + ++A++ +F K+
Sbjct: 717 ERRRRELLEKESEEKERRL---REAKIAAFFAPNQTKE 751
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 699 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 565
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 30.7 bits (66), Expect = 0.25
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Frame = -1
Query: 788 EEEKKISLSIRIKPLTIEXLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL 609
E+E +++ ++ I D+ RQ+ E L+ + D+E+ + EL
Sbjct: 338 EDESQLNAQVKNVQAKIRRAQRDQQRQEESE-----GSLDVTEIDVEQAFPLLNVPDAEL 392
Query: 608 KERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYER-RVDTRSYDDKKKLFEGDLEKL 432
E +Q RH+ L K + K I+ A++ ER D R + + + +
Sbjct: 393 DEAGLRQKRHQRLMKANYDARVRAKAEKAIEEAAEAERAEADERLRLENFSTWVNEKRET 452
Query: 431 NKDFLEKVWQERAEQF 384
+K LEK+ + + +F
Sbjct: 453 HKILLEKISKNKRLKF 468
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 30.7 bits (66), Expect = 0.25
Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Frame = -1
Query: 737 EXLSVDKLRQKAQELWECIVKLET-EKYDLEERQKRQDYDLK-ELKERQKQQLRHKALKK 564
E LS+ +L K Q+++E K+ E+ E R K+ + LK E + +K++ K+++K
Sbjct: 45 EQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMRK 104
Query: 563 GLDPEALTGKHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQF 384
++PP + S Y EG E+ ++ ++W E E+F
Sbjct: 105 CQIDLMYIKEYPPLTKYVSLYA---------------EGTSEQ-TEETRNRIWAEMEERF 148
Query: 383 GGRQKARLP 357
+K ++P
Sbjct: 149 NSGRKHKIP 157
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/52 (34%), Positives = 33/52 (63%)
Frame = -1
Query: 710 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLD 555
++AQE++ ++ L E D+E+ Q Q + L+E ++++LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 29.5 bits (63), Expect = 0.58
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Frame = -1
Query: 677 KLETEKYDL---EERQKRQDYDLKELKERQKQQLRHKALKKG------LDPEALTGKHPP 525
KLETEK + EE+++++ D K+ KE K + K ++ LTG+ PP
Sbjct: 173 KLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISKNEVDSSLIEASPLTGQVPP 232
Query: 524 K 522
K
Sbjct: 233 K 233
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.77
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = -1
Query: 677 KLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPPKIQVASKYE 498
KLE E+ L+E+Q+R KE + Q+LR K + L E + K ++++ + +
Sbjct: 129 KLEKERIRLQEQQRR--------KEERDQKLREKEEAQRLRQEQILNKERQQLKLNNFFT 180
Query: 497 RRVDTRSYDDKKKLFE--GDLEKLNKDF 420
+ V+ R ++ + + +L + K+F
Sbjct: 181 KGVEKRIAPNENFVADKTDELNEFEKEF 208
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 362 VAPFACRRTVRPSLATPSRGSPCSVSLGHPRTVSFC 469
V+PF R + P A P R P + +GH V++C
Sbjct: 1236 VSPFK-ERLLSPIFAKPLRALPFHIQIGHIDAVNYC 1270
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/82 (23%), Positives = 39/82 (47%)
Frame = -1
Query: 713 RQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGK 534
++K++++ E + K E +L+ + LKE ++QK+ L+ K + D L+ K
Sbjct: 19 KRKSKKMEELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEAD---LSQK 75
Query: 533 HPPKIQVASKYERRVDTRSYDD 468
H + Q K + + +D
Sbjct: 76 HATERQKLDKGDEETNETQQED 97
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.5 bits (58), Expect = 2.4
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Frame = -1
Query: 722 DKLRQKAQELWECIVKLETEKYDLEE----RQKRQDYDLKELKERQKQQLRHKALKKGLD 555
+K+ +K ++ + I K E +D E+ + KR+ L++ ++++K +L + K
Sbjct: 64 EKVLKKWKKRKKLIAKGLLEPFDAEDNEAKKMKREKEILRQQRQKRKSELTQLSQKVKEK 123
Query: 554 PEALTGKHPPKIQVASKYERRVDTRSYDD---KKKLFEGDLEKLN 429
+ + K +I + E D ++ D+ ++K +G+L++ N
Sbjct: 124 FKKMRKKPARRIVTIANDEEEEDDQTMDEDAFERKSMQGELKERN 168
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -1
Query: 791 LEEEKKISLSIRIKPLTIEXLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 612
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 611 LKERQK--QQLRHK 576
+E + ++LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = -1
Query: 674 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKHPP 525
LE ++YD+EE D DL+EL ++ + + ++ ++ +A G+ P
Sbjct: 84 LELDRYDIEELD--DDNDLEELDIGARRAVDARLRRRDIELDAAAGRTKP 131
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 803 PKXQLEEEKKISLSIRIKPLTIEXLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDY 624
P+ + E E K + I T + +V++L+ K +E + + K + EK D EE+ K++
Sbjct: 184 PESEPEAEPKSGIKEHILQETGDA-TVEELQNKGKEKQKELKKGKREKKDEEEKPKKKKQ 242
Query: 623 DLKELKER 600
KE+
Sbjct: 243 KKSSKKEK 250
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 395 PSLATPSRGSPCSVSLGHPRTVSFCRRRIVCRHASR 502
PS+++ S S+SL + +SFC+ + CR+ R
Sbjct: 328 PSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQR 363
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -1
Query: 578 KALKKGLDPEALTGKHPPKI---QVASKYERRVDTRSYDDKKKLFEGDLE-KLNKDFLEK 411
KALKK + + K+PP V+ K++R VD + + KL E KL+ L +
Sbjct: 1113 KALKKPYKYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNE 1172
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 26.6 bits (56), Expect = 4.1
Identities = 25/94 (26%), Positives = 44/94 (46%)
Frame = -1
Query: 740 IEXLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKG 561
IE L ++R+KA+E+ E + ++ ER+ RQ Y E ++R++Q + K +
Sbjct: 25 IEQLRKAQIREKAREITE---ERNRQRKLQRERELRQKY---EEEQRRQQAMEAKRIAAS 78
Query: 560 LDPEALTGKHPPKIQVASKYERRVDTRSYDDKKK 459
T + PP +K R V + + KK
Sbjct: 79 ---TRQTSERPPLSAEEAKRIREVKEKDRLESKK 109
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 720 QTPTEGPGTLGVHRQTRDREIRSRREAK 637
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = +2
Query: 383 RTVRPSLATPSRGSPCSVSLGHPRTVSFCRRR 478
R + P P R P ++ +GH +++C R
Sbjct: 1294 RLLSPIFGKPLRALPFTIQIGHIDAITYCLHR 1325
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 659 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 564
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 689 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 591
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -3
Query: 648 REAKETGLRLKRAQRKTKAATEAQSSQEGSRPRSAHRQAPAQNSSSVQVREACRHTILRR 469
R+ KE K A+ +A EA + E R H Q AQ + + A R R
Sbjct: 776 RQRKEI-FEQKLAEAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKERE 834
Query: 468 QKE 460
Q+E
Sbjct: 835 QRE 837
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = -3
Query: 711 TEGPGTLGVHRQTRDREIRSRREAKE---TGLRLKRAQRKTKAATEAQS-SQEGSRPRSA 544
TEG L + + RS+R+A E L L+R + K KA EA+ +++ S+ +
Sbjct: 4 TEGKNDLRAKLAEKIQTFRSQRKATEKVDRALLLQRRKEKAKARAEAKKLAKKESKAKQE 63
Query: 543 HRQAPAQNSSS 511
+ A +S
Sbjct: 64 SKVAAYDTGNS 74
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 617 KELKERQKQQLRHKALKKGLDPEALTG 537
KE+K+RQ+ Q K +++GL +G
Sbjct: 461 KEIKDRQRTQKEEKVVQRGLTQVLTSG 487
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 479 SYDDKKKLFEGDLEKLNKDFLEK 411
S DKKK+ +EK++KD L K
Sbjct: 120 SLKDKKKMIVSGIEKVHKDKLSK 142
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -1
Query: 728 SVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH 579
S++ +R + EC ++ + +EER K D + + E QK++L H
Sbjct: 21 SLNPIRSSLIKQEECYKTVDGDDNPIEERIKACDAGI-QTSEEQKKELEH 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,077,955
Number of Sequences: 5004
Number of extensions: 32521
Number of successful extensions: 206
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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