Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_A08
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 58 4e-09
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 58 4e-09
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 56 1e-08
04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292 33 0.12
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771... 31 0.36
03_02_0025 + 5084003-5084303,5084449-5084639,5084793-5084873,508... 28 3.3
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 27 4.4
04_03_0916 + 20794240-20794246,20794585-20796545 27 4.4
10_05_0041 - 8469769-8470164 27 5.8
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 5.8
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 27 7.7
11_04_0093 + 13407686-13409554 27 7.7
10_01_0146 - 1719997-1720386,1721498-1721515 27 7.7
02_03_0349 + 18010414-18014283 27 7.7
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 57.6 bits (133), Expect = 4e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = -3
Query: 247 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRG 134
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ G
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRING 74
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = -1
Query: 129 LARRALIELREKGLIKQVVQHHGQVIYTRAT 37
LARRA+ +L ++GLI+ V H Q IYTRAT
Sbjct: 76 LARRAMKDLMDRGLIRMVSVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 57.6 bits (133), Expect = 4e-09
Identities = 24/38 (63%), Positives = 32/38 (84%)
Frame = -3
Query: 247 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRG 134
+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ G
Sbjct: 37 VNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRING 74
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1
Query: 129 LARRALIELREKGLIKQVVQHHGQVIYTRAT 37
LARRA+ +L +GLI+ V H Q IYTRAT
Sbjct: 76 LARRAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -3
Query: 247 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 143
+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 971 VNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 35.1 bits (77), Expect = 0.022
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -1
Query: 129 LARRALIELREKGLIKQVVQHHGQVIYTRAT 37
LAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1094 LARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>04_03_0989 - 21475147-21475361,21477029-21477074,21477364-21479292
Length = 729
Score = 32.7 bits (71), Expect = 0.12
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 259 LFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASLNWKASAGRI 405
+F W S L R+R+L + F+A+ P + SWAA L A GR+
Sbjct: 65 VFTWNCMVSGLIRNRMLAEARKVFDAM-PVRNSVSWAALLTGYARCGRV 112
>03_05_0586 -
25875703-25876332,25876426-25876713,25877064-25877194,
25877299-25877812
Length = 520
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 356 REGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPGV 231
R G G + + E G+ +WR+ +EEE Q+K + E+ V
Sbjct: 345 RGGRGGESEERRRERGKGKWREEEEEEEEQQKGQEEEEEEQV 386
>03_02_0025 +
5084003-5084303,5084449-5084639,5084793-5084873,
5084972-5085319,5085409-5086293
Length = 601
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 389 AFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEE 276
A + + A+E EG G K EEE R R R+ +EEE
Sbjct: 461 AEELERKAEEEEEGGGGKGEKEREEEER-RQREKEEEE 497
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 350 GFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQPG 234
GFG S N+ +RWR + +++ Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 157 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTSSSWLCRHRI 306
I Q + L +G C + VY+ P S H+LF T+ +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>10_05_0041 - 8469769-8470164
Length = 131
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -2
Query: 371 AAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 273
A + GREG G+ +S ++ R RW+ +++
Sbjct: 31 ARERGREGGGEASSTTIDDGERRRWQDGLRDDL 63
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 27.1 bits (57), Expect = 5.8
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 144 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 287
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 144 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHFFFL 287
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>11_04_0093 + 13407686-13409554
Length = 622
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 256 ELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRPSWAASLNWKASAGRI 405
++ WTT S L R+ + + V F+A+ P+ + SW A ++ A RI
Sbjct: 196 DVMSWTTMISGLARNGSVDDAWVLFDAM-PERNVVSWNAMISGYARNHRI 244
>10_01_0146 - 1719997-1720386,1721498-1721515
Length = 135
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 342 PNSLKKHRRRRKDPVAAKPRRRS 274
P+ + RRRR +P +PRRR+
Sbjct: 83 PDDGGQRRRRRSEPATTQPRRRA 105
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -3
Query: 223 KPTYEKLYKEVPQYKLITPAVVSERL 146
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,374
Number of Sequences: 37544
Number of extensions: 252713
Number of successful extensions: 851
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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