Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A06
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.81 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   1.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   7.5  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   7.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 435 TVTILSPHTQQSSICGSIDAPLVGSYSNEHCSITSKPSNISMVANLSCSI 584
           T T ++ + Q  S  G+++  ++   + +  S T  P N    ANL C +
Sbjct: 558 TYTCVARNAQGYSARGTLEVQVMVPPTIQQFSFTKLPMNAGEFANLQCIV 607


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 174 STQCSQ*YLDSPYSTSNERLGIGILTITSTSVTGLH 281
           +T C    LD P   S  RL  G + +  T + GL+
Sbjct: 394 TTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGLN 429


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 210 MENRDITGSIVYSDKIFQQGEYVLHIES 127
           + +RD   S+ +  ++FQ  +Y+ HI+S
Sbjct: 302 LTSRDFLSSLAF--RVFQSTQYIRHIKS 327


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 454 GERIVTVNFLSDSVLTMTRFKGAKTKYNLCSAEN 353
           GE +  +N L  S +  T  +  KTK +L  +EN
Sbjct: 520 GETVGLLNALPPSSMKETEEEKKKTKQSLSPSEN 553


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -1

Query: 164 YFSKESMYCI*RVYSSIHEWRTSGTR*RNTKERQNVLGS 48
           Y   ++ +CI ++  S+H    +G   R+ K    +L S
Sbjct: 6   YSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLAS 44


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 504 GSYSNEHCSITSKPSNISMVANLSCSIF 587
           GSY  E C +T+     S+ A   C++F
Sbjct: 517 GSYFGEICLLTNARRVASVRAETYCNLF 544


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 504 GSYSNEHCSITSKPSNISMVANLSCSIF 587
           GSY  E C +T+     S+ A   C++F
Sbjct: 485 GSYFGEICLLTNARRVASVRAETYCNLF 512


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 105 PFMYGGVNSLYAIHTLLAEISCLST 179
           PF +GG+  +     +LA  +CL +
Sbjct: 560 PFTWGGIGVVVLFAVVLAGATCLGS 584


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 636 KRKKSFPEISRVFQSFRKCYKTDLRPSKCWT 544
           +RKKS  ++  +       YK++L+  KC T
Sbjct: 125 RRKKSLDDVKILRNDRIDSYKSNLKCDKCST 155


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 219 SNERLGIGILTITSTSVTGLHISKEDL 299
           +++R+G+GI T+ + S   L  S+ DL
Sbjct: 273 TSDRVGLGITTVLTLSTISLD-SRTDL 298


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 556 RWSQICLVAFSKTLEN 603
           +WS++C+V   K  EN
Sbjct: 52  KWSKVCIVVRRKLEEN 67


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 400 RFKGAKTKYNLCSAENYLPVLDLEGKIIRNNKNQRSSLDICK 275
           R +G +   + C     + V    G +I  N + RSS D C+
Sbjct: 345 RARGNQPSTSECGEFRSVVVQKRNGSMIECNISPRSSADSCQ 386


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 260 GCDCQNTNAKT 228
           GC+C+  N+KT
Sbjct: 434 GCECKTCNSKT 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,126
Number of Sequences: 438
Number of extensions: 5761
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)