Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_pT_A05
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0289 - 11688733-11691342                                         31   0.53 
09_04_0026 + 13896436-13896689,13896833-13896842                       28   3.8  
08_02_1602 - 28148255-28149413,28151927-28152087                       27   6.6  

>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 153 YGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPQEVNVVSKXEG 28
           YG   G+   A  +++ + PK DP  E AAP  V + S+  G
Sbjct: 251 YGAAVGVTYQANDTVQIKYPKNDPDAEYAAPASVYLTSRSMG 292


>09_04_0026 + 13896436-13896689,13896833-13896842
          Length = 87

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 42 TLHSLLAGRPVHQWGP 89
          TLH   A RPVH W P
Sbjct: 25 TLHEAAAARPVHGWNP 40


>08_02_1602 - 28148255-28149413,28151927-28152087
          Length = 439

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 60  AGRPVHQWGPA*VLQISEMGMLSCRFRDPLHTASQ 164
           AGRP H WG   +L +    +   R+ DP+    Q
Sbjct: 15  AGRPKHLWGRRSMLYMGHSRIYMDRYYDPIELHGQ 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,239
Number of Sequences: 37544
Number of extensions: 230274
Number of successful extensions: 498
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)