Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_pT_A05
(438 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M73031-1|AAA58630.1| 108|Homo sapiens coupling factor 6 protein. 56 4e-08
M37104-1|AAA51807.1| 108|Homo sapiens ATPase coupling factor 6 ... 56 4e-08
CR456950-1|CAG33231.1| 108|Homo sapiens ATP5J protein. 56 4e-08
BT007244-1|AAP35908.1| 108|Homo sapiens ATP synthase, H+ transp... 56 4e-08
BC001178-1|AAH01178.1| 108|Homo sapiens ATP synthase, H+ transp... 56 4e-08
AY544129-1|AAT11160.1| 108|Homo sapiens proliferation-inducing ... 56 4e-08
BC066310-1|AAH66310.1| 108|Homo sapiens ATP synthase, H+ transp... 53 5e-07
AY724958-1|AAU21154.1| 299|Homo sapiens taste receptor T2R4 pro... 29 7.0
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 29 9.3
X06268-1|CAA29604.1| 313|Homo sapiens pro-alpha 1 (II) collagen... 29 9.3
X02371-1|CAA26223.1| 288|Homo sapiens pro alpha 1(II) collagen ... 29 9.3
M63281-1|AAA52038.1| 207|Homo sapiens type II collagen protein. 29 9.3
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 29 9.3
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 29 9.3
BC130439-1|AAI30440.1| 299|Homo sapiens taste receptor, type 2,... 29 9.3
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 29 9.3
AF227131-1|AAF43904.1| 299|Homo sapiens candidate taste recepto... 29 9.3
AC004979-3|AAS02039.1| 299|Homo sapiens unknown protein. 29 9.3
AB199018-1|BAD97923.1| 277|Homo sapiens bitter taste receptor T... 29 9.3
AB199017-1|BAD97922.1| 277|Homo sapiens bitter taste receptor T... 29 9.3
AB199016-1|BAD97921.1| 275|Homo sapiens bitter taste receptor T... 29 9.3
>M73031-1|AAA58630.1| 108|Homo sapiens coupling factor 6 protein.
Length = 108
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYHQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M FP+ KFE+PK + I++ A
Sbjct: 87 MNTFPTFKFEDPKFEVIEKPQA 108
>M37104-1|AAA51807.1| 108|Homo sapiens ATPase coupling factor 6
subunit protein.
Length = 108
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYQQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M FP+ KFE+PK + I++ A
Sbjct: 87 MNTFPTFKFEDPKFEVIEKPQA 108
>CR456950-1|CAG33231.1| 108|Homo sapiens ATP5J protein.
Length = 108
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYQQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M FP+ KFE+PK + I++ A
Sbjct: 87 MNTFPTFKFEDPKFEVIEKPQA 108
>BT007244-1|AAP35908.1| 108|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F6
protein.
Length = 108
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYQQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M FP+ KFE+PK + I++ A
Sbjct: 87 MNTFPTFKFEDPKFEVIEKPQA 108
>BC001178-1|AAH01178.1| 108|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F6
protein.
Length = 108
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYQQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M FP+ KFE+PK + I++ A
Sbjct: 87 MNTFPTFKFEDPKFEVIEKPQA 108
>AY544129-1|AAT11160.1| 108|Homo sapiens proliferation-inducing
protein 36 protein.
Length = 108
Score = 56.4 bits (130), Expect = 4e-08
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYQQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M FP+ KFE+PK + I++ A
Sbjct: 87 MNTFPTFKFEDPKFEVIEKPQA 108
>BC066310-1|AAH66310.1| 108|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F6
protein.
Length = 108
Score = 52.8 bits (121), Expect = 5e-07
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = -1
Query: 303 AAQKATDPIQQLFLDKIREYKQK--SAGGKVPDASPAVXXXXXXXXXXXXKQYGGGPGID 130
A K DPIQ+LF+DKIREYK K ++GG V DAS + +G D
Sbjct: 31 AFNKELDPIQKLFVDKIREYKSKRQTSGGPV-DASSEYQQELERELFKLKQMFGNA---D 86
Query: 129 MTAFPSLKFEEPKLDPIDEQAA 64
M F + KFE+PK + I++ A
Sbjct: 87 MNTFHTFKFEDPKFEVIEKPQA 108
>AY724958-1|AAU21154.1| 299|Homo sapiens taste receptor T2R4
protein.
Length = 299
Score = 29.1 bits (62), Expect = 7.0
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 93 SSSXWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 129
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 1146 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 1174
>X06268-1|CAA29604.1| 313|Homo sapiens pro-alpha 1 (II) collagen
(313 AA; AA 975-271c) protein.
Length = 313
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 41 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 69
>X02371-1|CAA26223.1| 288|Homo sapiens pro alpha 1(II) collagen
protein.
Length = 288
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 16 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 44
>M63281-1|AAA52038.1| 207|Homo sapiens type II collagen protein.
Length = 207
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 134 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 162
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 1215 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 1243
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 184 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 212
>BC130439-1|AAI30440.1| 299|Homo sapiens taste receptor, type 2,
member 4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 93 SSSLWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 129
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 28.7 bits (61), Expect = 9.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 144 GPGIDMTAFPSLKFEEPKLDPIDEQAAPQ 58
GPGIDM+AF L E DP+ A Q
Sbjct: 1215 GPGIDMSAFAGLGPREKGPDPLQYMRADQ 1243
>AF227131-1|AAF43904.1| 299|Homo sapiens candidate taste receptor
T2R4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 93 SSSVWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 129
>AC004979-3|AAS02039.1| 299|Homo sapiens unknown protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 93 SSSVWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 129
>AB199018-1|BAD97923.1| 277|Homo sapiens bitter taste receptor T2R4
protein.
Length = 277
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 84 SSSVWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 120
>AB199017-1|BAD97922.1| 277|Homo sapiens bitter taste receptor T2R4
protein.
Length = 277
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 84 SSSVWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 120
>AB199016-1|BAD97921.1| 275|Homo sapiens bitter taste receptor T2R4
protein.
Length = 275
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/38 (31%), Positives = 27/38 (71%)
Frame = +2
Query: 299 AAAKFLVTIMEVVAALKPTSFDTSIFLIPIDQGISPRI 412
+++ + VT++ ++ +K T+F S+FL+ + + ISP+I
Sbjct: 82 SSSVWFVTLLNILYCVKITNFQHSVFLL-LKRNISPKI 118
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,733,675
Number of Sequences: 237096
Number of extensions: 1182259
Number of successful extensions: 1922
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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