Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P24
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 127 2e-30
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 103 2e-23
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 48 2e-06
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 42 2e-04
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 33 0.053
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 33 0.053
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.092
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 31 0.28
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 31 0.28
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.65
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.65
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 29 0.86
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.86
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.6
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 27 3.5
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 4.6
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 26 6.0
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 8.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 8.0
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom... 26 8.0
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 127 bits (306), Expect = 2e-30
Identities = 57/174 (32%), Positives = 90/174 (51%), Gaps = 2/174 (1%)
Frame = +2
Query: 242 CNACEKPI-VGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGRPYCEPDYHNLFSPR 418
C++C + G++I+A G+ HP+ F C C+Q L F+ R+G+ YC DYH FSPR
Sbjct: 258 CHSCGGSLRAGRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPR 317
Query: 419 CAYCNGPILDKCVTALEKTWHTEHFFCAQCGQQFGEE-GFHERDGKPYCRADYFDMFAPK 595
C +C PI D+ V +H H FCA C + F RD +C+ Y + +A K
Sbjct: 318 CKHCKTPIEDQAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVK 377
Query: 596 CGGCNKPIMENYISALNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTCVGV 757
C C KPI+ + + ++H C+ C C + + ++ +E P+C C +
Sbjct: 378 CKKCRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICRPCKAI 431
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 103 bits (248), Expect = 2e-23
Identities = 55/153 (35%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Frame = +2
Query: 242 CNACEKPIVGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGR------PYCEPDYHN 403
C +C + I GQ + ALG +H E F C CN + ++ FF D P CE DY
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASK-FFPIDDPTLNKQVPLCETDYFR 174
Query: 404 LFSPRCAYCNGPILDKCVTALEKTWHTEHFFCAQCGQQFG-EEGFHERDGKPYCRADYFD 580
CA C + +TAL K +H EHF C+ C FG + ++E +GK YC Y
Sbjct: 175 RLDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYST 234
Query: 581 MFAPKCGGCNKPIM----ENYISALNTQWHPDC 667
+FA +C GC+ PI+ E Y + ++ WH C
Sbjct: 235 LFAARCCGCDGPILRQFVEVYRNGVSQNWHVPC 267
Score = 59.3 bits (137), Expect = 7e-10
Identities = 36/113 (31%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Frame = +2
Query: 419 CAYCNGPILDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERDGK-----PYCRADYFDM 583
CA C I + V AL +H E F C C + F D P C DYF
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRR 175
Query: 584 FAPKCGGCNKPIMENYISALNTQWHPDCFVCKDCQNPV-KGKSFYAMEGKPVC 739
C C + YI+ALN ++H + F C C S+Y EGK C
Sbjct: 176 LDLLCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYC 228
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 48.0 bits (109), Expect = 2e-06
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = +2
Query: 470 KTWHTEHFFCAQCGQQF--GEEGFHERDGKP-YCRADYFDMFAPKCGGCNKPIMENYISA 640
K WH++ F C C ++ E F + D K +C+ + C GC+ PI E + +
Sbjct: 42 KCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCK-----LCVDICNGCSTPICE-FNAV 95
Query: 641 LNTQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTCVGVDDDE 769
N+Q + C C +C+ + +F +G+ C C+ D+E
Sbjct: 96 SNSQANHPC--CSNCRAFINSNAFGKFKGQHYCLPCLRKQDEE 136
Score = 42.7 bits (96), Expect = 7e-05
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Frame = +2
Query: 203 MXRQGVQTP-QKGC-CNACEK--PIVGQVITALGRTWHPEHFTCAHCNQELGTRNFFERD 370
+ R ++TP ++ C C C + P QV G+ WH + F C +CN++L +
Sbjct: 9 LDRLSLETPSERTCFCIKCWESVPSTSQVWFG-GKCWHSDCFKCVNCNKKL------DPS 61
Query: 371 GRPYCEPDYHNLFSPRCA-YCNGPILDKCVTALEKTWHTEHFFCAQCGQQFGEEGFHERD 547
+ + D +F C CNG C H C+ C F +
Sbjct: 62 SEDFSQDDQKQIFCKLCVDICNGCSTPICEFNAVSNSQANHPCCSNCRAFINSNAFGKFK 121
Query: 548 GKPYC 562
G+ YC
Sbjct: 122 GQHYC 126
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Frame = +2
Query: 290 GRTWHPEHFTCAHCNQELGTRNFF---ERDGRPYCEPDYHNLFSPRCAYCNGPILDKCVT 460
G WH + F C C++ L + DGRP C H C C I D +
Sbjct: 37 GHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSCAHT-----CTACRMRIKDYALM 91
Query: 461 ALEKTWHTEHFFCAQCGQQFGEEGFHERDGKPYC 562
+ ++H E F C C +Q + F + +C
Sbjct: 92 SGYDSYHRECFRCHDCRKQIIDSNFKRDNRTIFC 125
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +2
Query: 476 WHTEHFFCAQC--GQQFGEEGFHER-DGKPYCRADYFDMFAPKCGGCNKPIMENYISALN 646
WH + F C +C G + ++ + DG+P C + A C C I + + +
Sbjct: 40 WHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSS-----CAHTCTACRMRIKDYALMSGY 94
Query: 647 TQWHPDCFVCKDCQNPVKGKSFYAMEGKPVCPTC 748
+H +CF C DC+ + +F C C
Sbjct: 95 DSYHRECFRCHDCRKQIIDSNFKRDNRTIFCNDC 128
Score = 34.3 bits (75), Expect = 0.023
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +2
Query: 623 ENYISALNTQWHPDCFVCKDCQNPVKGKS---FYAMEGKPVCPTC 748
E IS WH DCF C C ++ +G+PVC +C
Sbjct: 30 ETPISFGGHMWHKDCFCCTKCDKGLEHSDQMLVQTSDGRPVCSSC 74
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 242 CNACEKPIVGQVITALGRTWHPEHFTCAHCNQELGTRNFFERDGR 376
C AC I + + ++H E F C C +++ N F+RD R
Sbjct: 78 CTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSN-FKRDNR 121
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 33.1 bits (72), Expect = 0.053
Identities = 24/100 (24%), Positives = 49/100 (49%)
Frame = +3
Query: 354 TSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RKRGTRSTSFALNAVSNLEKRV 533
TSSS ++ P++S TTT S + +++ S ++S + S+S + ++ S+
Sbjct: 136 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 195
Query: 534 SMKGTGSPTAGLITLTCSPPNAVVAISP*WKTISQRSTPS 653
S + S ++ + +T S ++ + S + S S PS
Sbjct: 196 SSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235
Score = 26.2 bits (55), Expect = 6.0
Identities = 33/138 (23%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Frame = +3
Query: 303 TLSTSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RKRG- 479
T +TSP+ +++ + + +SSS ++ ++S +++ S + +++ S ++S
Sbjct: 150 TTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVP 209
Query: 480 -TRSTSFALNAVSNLEKRVSMKGTGSPTAGLI-TLTCSPPNAVVAISP*WKTISQRSTPS 653
T STS + ++ S+ S S ++ I T++ S + V ++P + S ST S
Sbjct: 210 ITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTP---SSSSSSTSS 266
Query: 654 GIQTVSFARTARIPSKGS 707
+ + S A A SK S
Sbjct: 267 EVPS-STAALALNASKAS 283
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 33.1 bits (72), Expect = 0.053
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Frame = +3
Query: 294 ALGTLSTSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTATDRSWIN---ASQL 464
++ T S + + T++ A T SS ++ TAS T + S +ATD S + AS
Sbjct: 990 SVATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVT 1049
Query: 465 *RKRGTRSTSFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPPNAVVAISP*WKTISQRS 644
+ +T+ A ++ ++ S+ G+ S + ++T SP ++V A+S T S
Sbjct: 1050 GSSTSSVATASATDSSTSSVATASITGSLSSSIATASVTGSPTSSVTAVS---STSSVEG 1106
Query: 645 TPSGIQTVSFARTARIPSKGSPS 713
T S T++ A +A S + S
Sbjct: 1107 TAS--STIAAAASAATLSSDAAS 1127
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.092
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 2/135 (1%)
Frame = +3
Query: 312 TSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RKRGTRST 491
TS + T+T TSS+ T+ T+T C+ ++ T S + T ST
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 367
Query: 492 SFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPP--NAVVAISP*WKTISQRSTPSGIQT 665
S S S S + T T PP N+ ++P T+ S+ + + T
Sbjct: 368 STPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTP---TVPPTSSSTPLTT 424
Query: 666 VSFARTARIPSKGSP 710
+ + +P +P
Sbjct: 425 TNCTTSTSVPYTSTP 439
Score = 26.6 bits (56), Expect = 4.6
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 2/135 (1%)
Frame = +3
Query: 312 TSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RKRGTRST 491
TS + T+ TSS+ T T+T C+ ++ T S + T ST
Sbjct: 254 TSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
Query: 492 SFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPP--NAVVAISP*WKTISQRSTPSGIQT 665
S S S S + T T PP N+ ++P T+ ST S
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTP---TVPPTSTSSTSTP 370
Query: 666 VSFARTARIPSKGSP 710
A T+ + SP
Sbjct: 371 PPPASTSSTGTSSSP 385
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +3
Query: 480 TRSTSFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPPNAV---VAISP*WKTISQRSTP 650
T +T+ NAV NL+ + +GS + +++ C N ++ P T +
Sbjct: 368 TPNTTICSNAVKNLKCSANGTPSGSKISQVLSELCYYDNKACSSISSDPYEGTYGNYTGC 427
Query: 651 SGIQTVSFARTARIPSKGSPSMPWKG 728
+G+Q +S A A G+ S W G
Sbjct: 428 TGVQQLSIALNAYTQDHGADSCSWGG 453
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 30.7 bits (66), Expect = 0.28
Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 6/148 (4%)
Frame = +3
Query: 162 PHLSSICSDLFGQT*XAKEYKPPRRDAVTPARNQSLDR*SRRWVALGTLSTSPALTATRN 341
P L + S L +T K P+ + P+ N S + ++ + T P+ T+ R+
Sbjct: 544 PRLPRVASPL--KTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTKPSTTSLRS 601
Query: 342 WA---RGTSSSVTAGPTASP-TTTICSHRDALTATDR--SWINASQL*RKRGTRSTSFAL 503
+ R SS++ A ++S + S + + ++ + S+L K+ ST A
Sbjct: 602 QSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPSISKKLETSRLSTKKLPGSTMKAA 661
Query: 504 NAVSNLEKRVSMKGTGSPTAGLITLTCS 587
+A+ ++ SMK G L+T+T S
Sbjct: 662 SALKEYPQQQSMKSGGEKQDNLVTITMS 689
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.5 bits (63), Expect = 0.65
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Frame = +3
Query: 294 ALGTLSTSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RK 473
A T STS + TA + TSS + PT+S ++T S ++ TAT S S +
Sbjct: 394 ANSTTSTSVSSTAP---SYNTSSVL---PTSSVSSTPLSSANSTTATSASSTPLSSVNST 447
Query: 474 RGTRSTSFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPPNAVVAISP*WKTISQRSTP- 650
T ++S L++V N S T + T T + + +++ S STP
Sbjct: 448 TATSASSTPLSSV-NSTTATSASSTPLTSVNSTTATSASSTPLTSVNS-TSATSASSTPL 505
Query: 651 -SGIQTVSFARTARIPSKGSPSM 716
S T S + ++ PS + S+
Sbjct: 506 TSANSTTSTSVSSTAPSYNTSSV 528
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 29.5 bits (63), Expect = 0.65
Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 2/221 (0%)
Frame = +3
Query: 171 SSICSDLFGQT*XAKEYKPPRRDAVTPARNQSLDR*SRRWVALGTLSTSPALTATRNWAR 350
SS S L T + P + + + + S S + + + S+S + + T +
Sbjct: 122 SSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181
Query: 351 GTSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RKRGTRSTSFALNAVSNLEKR 530
+ S + PT P TTI SH + AT+ ++ N + + S A N+ L
Sbjct: 182 TSHKSSSYRPTVFPYTTI-SHYNITNATNGTYCNGTNGTNFTCIVNASNATNSTFWLNGT 240
Query: 531 VSMKGTGSPTAGLIT--LTCSPPNAVVAISP*WKTISQRSTPSGIQTVSFARTARIPSKG 704
S GT S + T P + +++ T S T ++ +S T
Sbjct: 241 NSTNGTNSTNSTSTTSHSLTKLPTSSKSLTTSKTTASGHITKGVMEALSTNDTTNTTDDA 300
Query: 705 SPSMPWKGSRYAQHALESMMMNKECLXMTSPLXTNALPQFF 827
+ + S + A S + ++ P+ +A+ FF
Sbjct: 301 TNTTSDSSSSSSASASSSSSSSSAASLVSQPVGISAVIAFF 341
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.1 bits (62), Expect = 0.86
Identities = 27/98 (27%), Positives = 46/98 (46%)
Frame = +3
Query: 309 STSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTATDRSWINASQL*RKRGTRS 488
STS + T A SSSV + +SPT++I ++ ++ + D + S + + S
Sbjct: 352 STSSSSTDQLTSASPISSSVISPSVSSPTSSILTNSGSIKSGDHQIVTTSFV-QTTTHGS 410
Query: 489 TSFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPPNAV 602
L V+ L + + S T L T+T SP N++
Sbjct: 411 QVETLTYVTTLTETILTTTYDSHTF-LTTITPSPSNSI 447
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.86
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Frame = +3
Query: 309 STSPALTATRNWARGTSSSVTAGPTASPTTTICSHRDALTA-TDRSWINASQL*RKRGTR 485
STS + ++T + +SSS TA ++S ++ I S + ++ T S +S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301
Query: 486 STSFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPPNAVVAISP*WKTISQRS----TPS 653
STS +++ S+ S + S + + + SP ++ IS + S S T S
Sbjct: 302 STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSS 361
Query: 654 GIQTVSFARTARIPSKGSPS 713
+ SF+ T S S S
Sbjct: 362 SKSSSSFSSTVSSSSSTSSS 381
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 480 TRSTSFALNAVSNLEKRVSMKGTGSPTAGLITLTCSPPNA 599
TR T + L+ V NL K++ +PT L TLT NA
Sbjct: 215 TRQTVYRLSEVDNLVKKLDTVIRLAPTGCLATLTSVHANA 254
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +3
Query: 711 SMPWKGSRYAQHALESMMMNKECLXMTSPLXTNALPQFFYSYAPIY 848
S W L + K C+ + + L N +PQ+F+ P+Y
Sbjct: 162 SSEWPEDVQENSTLPERKLPKGCMPLAA-LAANCMPQYFFVPGPVY 206
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 491 FFCAQCGQQFGEEGFHERDGKPYCRADYFDMFAPKCGGCNKPIMENYISA 640
++C C +F G P C +D+ +M P + P N+++A
Sbjct: 8 WYCHSCSNEFQRPG-----NCPRCNSDFVEMVEPNTAPEDDPRAANFVNA 52
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 486 SVCHVFSRAVTHLSKIGPLQ*AHLGEN 406
++C+V++RA + +S + P+ AHL N
Sbjct: 766 NLCYVYARATSAVSLVPPVYYAHLVSN 792
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 401 NLFSPRCAYCNGPILDK 451
++ SPRCA+ NG IL K
Sbjct: 20 SILSPRCAFHNGGILHK 36
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.0
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Frame = +3
Query: 162 PHLSSICSDLFGQT*XAKEYKPPRRDAVTPARNQSLDR*SRRWVALGTLSTSPALTATRN 341
P + S+ DLF KE P + +P + + R ++GT P +
Sbjct: 46 PVMESMADDLFNSIQKKKEPSPASSASASPVKKSAEALAERSNSSMGTFDPPPRYSKI-- 103
Query: 342 WARGTSSSVTAGPT-ASPTTTICSHRDALTATDRSWINASQL*RKRGTRSTS 494
AR S+ V + SP SH D+ +T S + + R + R S
Sbjct: 104 -ARARSTHVASSSRHRSP-----SHNDSSPSTQSSLKSRGSIRRYKSVREGS 149
>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 412 TEMRLLQRTDLG*MRHSSRENVAHGALLLRSMRSAI 519
T+M L+ RTDLG + AH AL + SA+
Sbjct: 91 TKMVLVVRTDLGMTKGKIAAQCAHAALACYKIASAV 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,906,620
Number of Sequences: 5004
Number of extensions: 87942
Number of successful extensions: 271
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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