Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P24
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    29   0.073
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.4  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 0.073
 Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
 Frame = +2

Query: 389 PDYHNLFSPRCAYCNGPILDKCVTALEKTWHTE--HFFCAQCGQQFGEEG 532
           PD HN  + +   C  P LD CV  + + W     H  C Q G      G
Sbjct: 159 PDIHNSVTGKTTACFEPSLDYCVVKIPR-WDLGKFHRVCTQIGSSMKSVG 207


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -1

Query: 269  QRLVSRRRYSIPSGGFVLLGGSCLPEEIRAYAREMRTRVDAGWCGTVPATRVSLCTRESR 90
            +R   R RY+IPS G + +     P     Y R + T    G  G+V  T VS    + R
Sbjct: 1194 KRFWERLRYAIPSAGDISIESKSSP---LVYKRNINTYTLDG-VGSVEKTGVSTLRGQER 1249


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 50  SGSIRAVSGTGGDSGTHVYREKRAWQEQYRTNPRQP-ESASLEHMLG 187
           SG+ R +    G  G H  +  +A       +P QP ++AS+   LG
Sbjct: 72  SGTDRVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLG 118


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 315 SPALTATRNWARGTSSSVTAGPTASPTTT 401
           +PA T T      T+++ T   T +P TT
Sbjct: 653 APATTITTITTTTTTTTTTTTTTTTPNTT 681


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,130
Number of Sequences: 438
Number of extensions: 6189
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)