Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P23
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    29   1.1  
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    28   1.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    26   6.1  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    26   6.1  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    26   8.0  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   8.0  

>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 357 FRYFSAFLNKFIGLLGHARKTPVKFYPRKIF 265
           F YF+  +   +G+LGH  KT + F+  +IF
Sbjct: 288 FCYFAGMVMAVVGILGHFSKTLMLFFIPQIF 318


>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +1

Query: 547 IYKREHGSSVEKELYKDMTIPELIDRLLLKRAVSFMGAR--DAYMLMSG--KKGVDGWEN 714
           I+ +E    VEK+    + +P      +LKRA+S +G R  + Y  +SG  K G      
Sbjct: 25  IFLKEDTEDVEKKSLYLINVPITTTEKILKRAISQLGGRIVNIYPNISGLLKSGTHLRVK 84

Query: 715 VGTPAETEPLV 747
           +  PAE + ++
Sbjct: 85  LVEPAEVKQVI 95


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
 Frame = -1

Query: 803 SRTKKAESFISS*LSTSFNTSGSVSAGVPTFSQPSTPFLPLINIYASRAPINDTALFSNN 624
           S + +  S +SS L +  +   S S+  P+ S  S+P   +++  +S  P + ++ FS++
Sbjct: 498 STSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSS-SSSIPTSSSSDFSSS 556

Query: 623 -RSISSGM----VISLYNSFSTLLPCS 558
             +ISSG+    + S ++S S++L  S
Sbjct: 557 ITTISSGISSSSIPSTFSSVSSILSSS 583


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -1

Query: 680 INIYASRAPINDTALFSNNRSISSGMVISLYNSFSTLLPCSRLYIKKCAISNKTLSCIIG 501
           I  YA  A  + T+ +S  + IS+  +I  Y +   +L    L   KC        C+ G
Sbjct: 107 ITEYARYATGHGTSGYSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYG 166

Query: 500 YVSEIFL 480
           Y + ++L
Sbjct: 167 YANIVWL 173


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = +1

Query: 439 LEKLKEHRPIDRLKRNISETYPIIHERVLLLMAHFLIYKREHGSSVEKELYKDMTIPELI 618
           L K++ H   +R +R + E      ERV      F + + E    ++ + YK M   + +
Sbjct: 99  LSKMERHLEEERAERVMHEFRAQEKERVKEGKKPFYLKRNEQKKLIQMDKYKSMEGTKAL 158

Query: 619 DRLLLKR 639
           D+ + K+
Sbjct: 159 DKYIEKK 165


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 463 PIDRLKRNISE-TYPIIHERVLLLMAHFLIYKREHG 567
           P+D  +RN SE +     ER+ + +AH +++ R+ G
Sbjct: 96  PVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAG 131


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -1

Query: 794 KKAESFISS*LSTSFNTSGSVSAGVPTFSQPSTPFLPLINIYASRAPI 651
           ++  + ++S L+ + + +G   A     + PST F P  N  A+ +P+
Sbjct: 389 RRVAALLASRLNLNHSVTGDGEAKQVVITMPSTHFTPANNSSANHSPL 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,625,677
Number of Sequences: 5004
Number of extensions: 78224
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)