Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P21
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...   163   2e-41
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    31   0.22 
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    31   0.29 
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    30   0.51 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    28   1.5  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    28   2.0  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   6.2  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  163 bits (397), Expect = 2e-41
 Identities = 82/179 (45%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
 Frame = +1

Query: 133 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 312
           EV I SAVRTPM                   +  A+ER  I   ++ EV++GNV SANLG
Sbjct: 5   EVYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSANLG 64

Query: 313 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 492
           Q PARQ  + AGLP+S +CTTVNKVCASGMK+ +L AQ + TG  +I++AGG ESMSN P
Sbjct: 65  QNPARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQTIMTGNAEIVVAGGTESMSNAP 124

Query: 493 FYLKRGE--TSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKLLDKIKMNMLSI 663
           +Y  +      YG ++LVDG++ DGL+D Y+   MGN AE  A+ +  +D+   +  +I
Sbjct: 125 YYAPKNRFGAKYGNVELVDGLLRDGLSDAYDGLPMGNAAELCAEEHS-IDRASQDAFAI 182



 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 22/42 (52%), Positives = 26/42 (61%)
 Frame = +2

Query: 758 IFAEDEEYKRVNFEKFTKXSTVSQKENGTVTAGXASTLNDGS 883
           +  EDEE K +N +K      V  K NGTVTA  ASTLNDG+
Sbjct: 216 LVTEDEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLNDGA 256



 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +3

Query: 627 ITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPV 731
           I R  QD +A++SYKR+  A   KAF  E+VPV V
Sbjct: 172 IDRASQDAFAISSYKRAQNAQATKAFEQEIVPVEV 206


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 752 LLIFAEDEEYKRVNFEKFTKXSTVSQKENGTVTAGXASTLNDG 880
           +LIF+ED+E   ++F++F   S +S   N  +    AS L  G
Sbjct: 444 MLIFSEDKEQSSISFQEFVSFSPLSSTLNFALFHQAASKLKTG 486


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 373 TVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSN 486
           T    CA+G  +I  A   ++ G  D+I+AGG ES  N
Sbjct: 165 TTTTACAAGCHAIGDAFNFIKLGHADVIIAGGSESCIN 202


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 158 LTADAITTSLRETLVENAAIAVNICNKTLKSNKTMFLLDTSNHYLLRQLIN 6
           L  + +TTS ++ L+ N    + +C   L  N   F L+ +N Y+   ++N
Sbjct: 528 LAVENVTTSKKDNLILNVDGCIAVCFVDLLRNCGAFTLEEANEYINLGILN 578


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 152 ADAITTSLRETL-VENAAIAVNICNKTLKSNKTMFLLDTS 36
           ++ I  S+R T+ +E A +A  +CN +   NK   +LDT+
Sbjct: 358 SEHIELSVRRTVGIEKALLAAALCNNSKVHNKADSILDTT 397


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 173 EPIGVLTADAITTSLRETLVENAAIAVNICNKTLKSNKTMFLLDTSNHYL 24
           E +G+L  D +   L + +VEN    +    K L +N+T +LL +   +L
Sbjct: 295 ESLGLLVDDRV--DLAKGMVENFIFEITYYGKILNANRTYYLLRSQPPFL 342


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 333 CNICRFAKKYHMYNCKQSMC 392
           CN+C +  KY   NC  S C
Sbjct: 102 CNVCGYWGKYACQNCGTSYC 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,045
Number of Sequences: 5004
Number of extensions: 68368
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)