Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P21
         (888 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)             123   2e-28
SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)            66   5e-11
SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   1e-05
SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)          29   6.6  
SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score =  123 bits (296), Expect = 2e-28
 Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 1/167 (0%)
 Frame = +1

Query: 133 EVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVYIGNVCSANLG 312
           +V+IA AVRTP+                   V  A+ RA I   ++ EV +G V +A  G
Sbjct: 9   DVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQG 68

Query: 313 QAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDIILAGGMESMSNVP 492
           Q PARQA I AG+P       VN +C SG+K++ L  Q +  G  +I++AGG ESMS  P
Sbjct: 69  QGPARQAAIHAGIPACVPAYGVNMLCGSGLKAVALGYQAVAMGDSNIVVAGGQESMSQAP 128

Query: 493 FYL-KRGETSYGGMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKL 630
                R    +G M L+D ++ DGL D +N +HMG  AEN AK +++
Sbjct: 129 HCCHMRPALKFGDMTLIDTMLKDGLMDSFNNYHMGITAENVAKQWEV 175



 Score = 37.1 bits (82), Expect = 0.019
 Identities = 15/42 (35%), Positives = 29/42 (69%)
 Frame = +3

Query: 612 SKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVXT 737
           +K+ +++R++QD +A+ S +R+  A +A  F DE+V V + T
Sbjct: 170 AKQWEVSREEQDNFALTSQQRTETAQKAGYFSDEIVTVSIKT 211


>SB_51267| Best HMM Match : Thiolase_N (HMM E-Value=2.2e-35)
          Length = 415

 Score = 65.7 bits (153), Expect = 5e-11
 Identities = 29/43 (67%), Positives = 35/43 (81%)
 Frame = +2

Query: 755 LIFAEDEEYKRVNFEKFTKXSTVSQKENGTVTAGXASTLNDGS 883
           ++F EDEEYK+V+FEKF    TV +KENGTVTA  ASTLNDG+
Sbjct: 114 IVFEEDEEYKKVSFEKFPSLKTVFKKENGTVTAANASTLNDGA 156



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 11/60 (18%)
 Frame = +1

Query: 307 LGQAPARQAVIFAG-----------LPKSTICTTVNKVCASGMKSIMLAAQGLQTGAQDI 453
           +GQAPARQA + AG           LP ST CTT+NKVCASGMKSIM AAQ L  G+Q +
Sbjct: 1   MGQAPARQAALGAGTRXVTSIRDQALPISTPCTTINKVCASGMKSIMAAAQSLMCGSQGV 60



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/53 (43%), Positives = 36/53 (67%)
 Frame = +3

Query: 585 SHGKLC*KHSKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVXTEK 743
           S G      + K  ITR++QD+YA++SY+R+AAA++A  F  E+VPV +  +K
Sbjct: 57  SQGVCAENAASKYNITREEQDDYAIHSYRRTAAAWDAGKFKQEVVPVNIPQKK 109


>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 21/44 (47%), Positives = 33/44 (75%)
 Frame = +3

Query: 612 SKKLQITRQDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVXTEK 743
           ++K  ITR++ D++A+ S +R AAA+E+ AF  E+VPVPV  +K
Sbjct: 827 AEKYNITREECDQFALLSQQRWAAAHESGAFTAEIVPVPVKGKK 870



 Score = 40.3 bits (90), Expect(2) = 1e-05
 Identities = 31/109 (28%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
 Frame = +1

Query: 103  AAFSTKVSLNEVVIASAVRTPMXXXXXXXXXXXXXXXXXXXVNAAIERAGIPKEEIKEVY 282
            A F  +  L+    A+A RT                       AA+E   +    +  V 
Sbjct: 693  AGFLCEAWLSNKKFAAAKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVI 752

Query: 283  IGNVCS-ANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIMLAAQ 426
             GNV   AN     AR   I + +P +T   TVN++C SG +SI+  AQ
Sbjct: 753  FGNVLQCANDAAYVARHIGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801



 Score = 26.6 bits (56), Expect(2) = 1e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 526 GMQLVDGIVFDGLTDVYNKFHMGNCAENTAKNYKL 630
           G Q+ D + + GLTD+     MG  AEN A+ Y +
Sbjct: 799 GAQMEDTL-WQGLTDMLPGLPMGITAENLAEKYNI 832


>SB_57005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 534 LHSSIRSFTSLQIKRYI*HRFHPTSKYYILGSSL*TLCCQ-HYRFHARGTYFVYSCTYGT 358
           +HS+ R+  +    RY     H T     + S+  TLC Q H R+  + T+ +YS T+  
Sbjct: 102 MHSNTRTLCTKTHARYALKHTHTT-----MHSNTRTLCTQTHARYALKHTHTMYSNTHTL 156

Query: 357 FWQTCKYYSL 328
             QT  +Y+L
Sbjct: 157 CTQTHAHYAL 166


>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
          Length = 1571

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 269  ISSLGIPALSIAALTATAPNSDADKLDKLPRKEPIGVLTADAITTSLRETLVENAAIAVN 90
            I+S  +P  +   L AT   S    L+K   +E +    A A+ T +  TLVE   + VN
Sbjct: 972  ITSTSVPEQNATVLPATTFQS----LNKTTTEESVVEPNATAVPTRVNATLVETTGMPVN 1027

Query: 89   I 87
            +
Sbjct: 1028 V 1028


>SB_36506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 285 WQCLFCKFGPSTCKTSCNICRFAKKY-HMYNCK-QSMCLWHEIYNVGSTR 428
           W+C   K  PS  ++   +  F KKY H +    +S  LW+  Y + + R
Sbjct: 80  WECEHVKPVPSDVRSKMRLSGFYKKYLHAFGIPVRSNTLWYRTYAMSTDR 129


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 285 WQCLFCKFGPSTCKTSCNICRFAKKYHMYNCKQSMCL 395
           WQ  + + GP   KTSC +C    KY++ N     CL
Sbjct: 864 WQSNYTQCGPCASKTSCPVCNI--KYNL-NDLMIQCL 897


>SB_27914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 27/102 (26%), Positives = 41/102 (40%)
 Frame = +1

Query: 238 IERAGIPKEEIKEVYIGNVCSANLGQAPARQAVIFAGLPKSTICTTVNKVCASGMKSIML 417
           I + GI  EEI      +V  A +        + + G PKS +CT+VN+V   G+ +   
Sbjct: 72  IVKVGITTEEIDY----HVHKAIIEHGAYPSPLNYRGFPKS-VCTSVNEVAVHGIPNSRC 126

Query: 418 AAQGLQTGAQDIILAGGMESMSNVPFYLKRGETSYGGMQLVD 543
              G        +  GG+       F +  G     G +LVD
Sbjct: 127 LQNGDLLSVDISLFYGGVHGDLCETFLV--GNVDESGRRLVD 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,409,901
Number of Sequences: 59808
Number of extensions: 526224
Number of successful extensions: 1381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)