Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P20
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 31 0.20
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 28 1.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 3.2
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 26 5.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 5.6
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 7.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 26 7.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.9
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.9
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 12 RPGPTLARRLVHXHHTTLFNYDRYLTEYEHDID 110
RPGPT+ RL H T+ D Y HDID
Sbjct: 43 RPGPTMLNRLQEHLHDTILP-DVLAASYRHDID 74
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +1
Query: 127 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPXRR 255
T + GR+ +P S+K R + +RS S R E+RYRP RR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +2
Query: 284 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 463
TL S T T+S P Y + S+ T + + T S T S + QD
Sbjct: 236 TLESSSLTNTVS-PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQD 294
Query: 464 ACDVELIPST 493
+ ++ PST
Sbjct: 295 STTIDSTPST 304
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +2
Query: 341 YPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTIS 520
Y + + S + S + S+ +++L+ SI G S + +PST + H +IS
Sbjct: 3634 YDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSIS 3693
Query: 521 TGWLPST 541
P+T
Sbjct: 3694 DTKSPAT 3700
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 453 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 539
R+ ++ +WS LRRP P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 478 VDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD 579
+D D + H D+LAA YPS +G++ D
Sbjct: 691 LDMQDLKEKASKHADKLAAFMVTYPSTFGIFEPD 724
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 5.6
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Frame = +1
Query: 211 SEDIRAEERYRPXRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 381
S D+ E RR+ P+ + SK+ Y P E I + V + Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629
Query: 382 GYSPRPIYAHNYPRSL 429
+ PRP N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +1
Query: 250 RRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSL 429
RR V+ YP K Y +A + PG R SP A R
Sbjct: 665 RRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIA 724
Query: 430 DYYRPIYH 453
DY R +YH
Sbjct: 725 DYSRKVYH 732
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.5
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 269 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQS 448
+S TLT S +T+ S+P +T + LS + S++T + S ++ ++ S + S
Sbjct: 224 SSSSSTLTSSSLSTS-SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 449 --TTCQDACDVELIPSTPTRHGRTIST 523
+T S+PT TIS+
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISS 309
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 308 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIP 487
TT S PL P+ V C IA + ALS+ A G TC+D +P
Sbjct: 82 TTYSYPLISGGAPSAVWCWLIAGAGCMCIALSVAELVSAYPTSGGLYFTCKDLVPARSMP 141
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.5
Identities = 24/88 (27%), Positives = 33/88 (37%)
Frame = +2
Query: 281 PTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQ 460
PT T S T + LP + + ST PT+T + S ++T
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324
Query: 461 DACDVELIPSTPTRHGRTISTGWLPSTG 544
+PST T T ST +P TG
Sbjct: 325 TGTSSSPLPSTST--SCTTSTS-IPPTG 349
Score = 25.4 bits (53), Expect = 9.9
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = +2
Query: 266 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 445
P S LT + TT+ S+P P T T L+ T + S+P T+ ++
Sbjct: 415 PTSSSTPLTTTNCTTSTSVPYTST--PVTSTPLATTNCTT---STSVPYTSTPVTSTPLT 469
Query: 446 STTCQDACDVELIPSTPTRHGRTISTGWLPST 541
+T C + + STP +T ST
Sbjct: 470 TTNCTTSTSIP-YTSTPVTSTPLTTTNCTTST 500
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +1
Query: 328 ERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIY 450
++ +V Y P H S RPI +N DY +Y
Sbjct: 875 DKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYATKLY 915
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 574 KDRAYPITDLTAPLIDPLK--PKSLKGIEYXPDN 669
K RAYP D P++D L+ +L+ EY N
Sbjct: 379 KYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRN 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,327
Number of Sequences: 5004
Number of extensions: 64492
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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