Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P16
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    29   0.58 
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   4.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   4.1  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    26   5.4  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.4  

>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -1

Query: 735 SVXYSATSLPSTPKYKPLNKNNIAMS 658
           ++ Y+ TSLPSTP  K L+K ++AMS
Sbjct: 273 TISYATTSLPSTPG-KRLSKESLAMS 297


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 362 RSYAFFTMIAMWSIPVMISFKNGWWRFVSIWSVFTLL 472
           R Y     I ++ +    +  NGW   V+IW++F +L
Sbjct: 120 RKYLLVLPIILFLMSTHYTHYNGWMFLVNIWALFMVL 156


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +2

Query: 338 VQWKKRHYRSYAFFTMIAMWSIPVMISFKNGWWRFVSIWSVFTLLTALVIRKSSIKPMSA 517
           +QW++  Y+S   F     W +  + +F   W   +S++  FT+  +  I   +   +  
Sbjct: 401 IQWQRVCYKS---FRESRTW-LHFLHNFSRIWILHISVFWYFTVYNSPTIYTPNFHYLEG 456

Query: 518 TTPRLVYKW 544
           T P    KW
Sbjct: 457 TQPARAAKW 465


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 284 TTMVLILIGALVISQVVIVQ-----WKKRHYRSYAFFTMIAMWSIPVMISF 421
           T  ++I I ALV+S  +        W+K+  R   + T   +  +P+++SF
Sbjct: 572 TNRIVIFIFALVVSMAIYCTAAYFVWQKKVERKLWYLTNSKLSFVPILVSF 622


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 438 DLYRFGVYS-HSLQL*SLEKVQLSQCLLLRLD*CTNG 545
           D++ +GV+   +++L S++    S CLLLR+D   +G
Sbjct: 486 DMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSG 522


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 283 YNYGLNINRSTCNFTSCHCPMEETT 357
           YNY +  N +  NFT+C+   +E T
Sbjct: 13  YNYSVYSNGTISNFTNCYLINDEHT 37


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 277 NAYNYGLNINRSTCNFTSCHCP 342
           N+Y Y +NIN ST +  S + P
Sbjct: 285 NSYGYEININESTNHVDSSYLP 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,542
Number of Sequences: 5004
Number of extensions: 65001
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)