Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P16
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    31   1.1  
05_03_0362 - 12973488-12974251,12975346-12975580,12976410-129767...    30   2.4  
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521...    29   4.3  
04_03_0133 - 11653859-11653962,11658466-11658979                       28   7.4  
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729...    28   9.8  
01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318     28   9.8  

>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +2

Query: 260 HKGHESMHTTMVLILIGALVISQVVIVQWKKRHYRSYAFF----TMIAMWSIPVMISFKN 427
           H G+ S    + ++L+   ++S V+++ W K  + ++ F     T+ A++    +I F+ 
Sbjct: 358 HLGNASGLAVITVMLVTTCLMSLVIVLCWHKSIFLAFGFIIFFGTIEALYFSASLIKFRE 417

Query: 428 GWWRFVSIWSVFTLLTAL 481
           G W  + +  +F  +  +
Sbjct: 418 GAWVPIVLAFIFMAIMCI 435


>05_03_0362 -
           12973488-12974251,12975346-12975580,12976410-12976738,
           12977277-12977404,12977695-12977879,12977972-12978165,
           12978239-12978368,12978507-12978566,12979037-12979059,
           12979158-12979218,12979677-12979748,12979804-12979924,
           12980351-12980415,12980973-12981089,12981970-12982239
          Length = 917

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 446 SIWSVFTLLTALVIR--KSSIKPMSATTPRLVYKWFYLIYKVCCFVGVFGYILMMLTMLG 619
           S+ S F  L +  I+  +S + P +A   RL+ K+F +         V+G +  +LT +G
Sbjct: 415 SLHSTFLDLLSATIKGMRSQLLPHAANIVRLITKYFEIAKLSTMRTKVYGIVQQLLTSMG 474

Query: 620 VNL 628
           V +
Sbjct: 475 VGI 477


>11_06_0346 -
           22549699-22549721,22549857-22549999,22550100-22552175,
           22552305-22552822
          Length = 919

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 188 PNKTYQELTSEERLRYDHQKLHELHKGHESMHTTMVLILIGALVI---SQVVIVQW 346
           P K  +ELTS ERL   H K+ +L  G   +     L L G L+     Q+V ++W
Sbjct: 562 PEKV-KELTSLERLDISHTKISDLPSGVCRLPNLETLDLRGTLISQLPDQIVRIKW 616


>04_03_0133 - 11653859-11653962,11658466-11658979
          Length = 205

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 200 YQEL-TSEERLRYDHQKLHELHKGHESMHTTMVLILIG 310
           Y+EL TS ERL   H+KL E H    S      LI +G
Sbjct: 21  YEELKTSHERLTISHEKLKEAHDNLLSTTQHEALIDVG 58


>05_03_0003 -
           7298555-7298841,7299199-7299386,7299484-7299683,
           7299774-7300038,7302403-7302512
          Length = 349

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 7/40 (17%), Positives = 21/40 (52%)
 Frame = +2

Query: 356 HYRSYAFFTMIAMWSIPVMISFKNGWWRFVSIWSVFTLLT 475
           H+  +  F ++  + +PV    K  ++ +  +W ++ +L+
Sbjct: 140 HFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILS 179


>01_06_0590 + 30453407-30455442,30456313-30456586,30456992-30457318
          Length = 878

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 640 LSEHQVDAEHCKHHQYVTKHTNKTANFIY*IKPFVH*SRRSSR 512
           LSE++    H KH++YV+ H     +  Y  K ++H   RS R
Sbjct: 528 LSENEKQLRHEKHYRYVSSH-----DVAYWSKSYIHDLERSCR 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,373,008
Number of Sequences: 37544
Number of extensions: 399402
Number of successful extensions: 843
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)