Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P16
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)              217   9e-57
SB_11567| Best HMM Match : Peptidase_M13 (HMM E-Value=9.1)             29   5.7  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     28   7.6  

>SB_47960| Best HMM Match : Extensin_2 (HMM E-Value=0.54)
          Length = 710

 Score =  217 bits (530), Expect = 9e-57
 Identities = 89/178 (50%), Positives = 134/178 (75%)
 Frame = +2

Query: 230 RYDHQKLHELHKGHESMHTTMVLILIGALVISQVVIVQWKKRHYRSYAFFTMIAMWSIPV 409
           R +H+KLH  HKGHE+MH  MVLIL   L+++Q+V+V+WKK H++SY   T++ MW IPV
Sbjct: 46  RIEHEKLHAKHKGHEAMHMEMVLILFATLIVAQIVLVKWKKMHFKSYQTVTLVGMWLIPV 105

Query: 410 MISFKNGWWRFVSIWSVFTLLTALVIRKSSIKPMSATTPRLVYKWFYLIYKVCCFVGVFG 589
             + K  +WR +++W+VF+L TA ++ K++ +P+S TTPRLVYKWFY ++KV   +G+ G
Sbjct: 106 YFNVKLHYWRMMAVWTVFSLATAFIVYKATRQPVSTTTPRLVYKWFYSVHKVTYALGIAG 165

Query: 590 YILMMLTMLGVNLMFGQKPQVWMDIAILFLFNGLYFGVLGRDVAEYXTDQMAASIGYY 763
           Y+++M T+LG+NLMF  +P+  M+  I+ +F GLY+GVLGRD AE  +D+MA+ IG +
Sbjct: 166 YLVIMFTLLGLNLMFMVRPETSMEFGIVVMFYGLYYGVLGRDFAEICSDKMASKIGVF 223


>SB_11567| Best HMM Match : Peptidase_M13 (HMM E-Value=9.1)
          Length = 285

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -3

Query: 721 SNIPP*YSEVQAVKQKQYSYVHPDLGLLSEHQVDAEHCKHHQYVTKHTN 575
           S++PP    +Q   +   + +HP+ G    H+  A+ C+ +QY+ +H++
Sbjct: 162 SSVPPC---IQQQTRALLATLHPNKGSYHNHKDQAQICQVNQYLAEHSS 207


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = -3

Query: 721  SNIPP*YSEVQAVKQKQYSYVHPDLGLLSEHQVDAEHCKHHQYVTKHTN 575
            S++PP    +Q   +   + +HP+ G    H+  A+ C+ +QY+ +H++
Sbjct: 941  SSVPPC---IQQQTRALLATLHPNKGSYHNHKDQAQICQVNQYLAEHSS 986


>SB_57003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 533 VYKWFYLIYKVCCFVGVFGYILMMLTMLG 619
           +Y   +++  + CFVG FG  L  L +LG
Sbjct: 34  LYLGLFVVELIICFVGAFGNTLTCLAVLG 62


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 534 TNLGVVADIGLIELFLMTRAVRSVNTLQIDTNLHQPFLKLIMTGMDHM 391
           +NLG VAD   +  F+       V TL I ++  +P+  L+ T MD++
Sbjct: 31  SNLGRVADKPALYAFVSPGLRTPVITLSIGSSPLKPYSHLLFTSMDNL 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,998,047
Number of Sequences: 59808
Number of extensions: 472321
Number of successful extensions: 1167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)