Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P15
(774 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.10
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 1.3
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.0
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 5.2
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 6.9
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 26 6.9
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 9.1
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 9.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.10
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 224 PPEDWPKTTVPSSPSRTTITFISSPP-PSTEDCCSTS 331
PP T+ P P+ T+ T SS P PST C+TS
Sbjct: 306 PPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 224 PPEDWPKTTVPSSPSRTTITFI-SSPPPSTEDCCSTS 331
PP T++P P+ T+ T SSP P+T C+TS
Sbjct: 196 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 232
Score = 30.7 bits (66), Expect = 0.24
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 224 PPEDWPKTTVPSSPSRTTITFI-SSPPPSTEDCCSTS 331
PP T++P P+ T+ T SSP P+T C+TS
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 288
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +2
Query: 224 PPEDWPKTTVPSSPSRTTITFISSPPP-STEDCCSTS 331
PP T+ P P+ T+ T SS P ST C+TS
Sbjct: 360 PPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTS 396
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 514 SSKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGG 624
+S +FK E K L +DE+ EH E + D+GG
Sbjct: 868 ASNMFKAENNQKKLEDMNLDEILEHAEDHDTSNDVGG 904
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 655 QQRIALEKFSTLMKETSTKLDDFMHXIVDCDMGNDPTQ 768
++R+ALEK +M++ + F+ D D+G D T+
Sbjct: 1280 KKRLALEKQKKIMQQFRDQQASFLAQNTDFDIGEDQTE 1317
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 460 AVYVLRPSSFLQKALSEVSSKLFKEEFRF 546
A Y+ R + L+K E+S+K FK++ F
Sbjct: 467 AEYIYRTTIELEKRFQEISNKEFKDKMSF 495
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +1
Query: 553 LVCSTVDELYEHFERSQLTPDLGG--ELQYSHSEWI--QQRIALEKFSTLMKETST 708
L+ +T +YE + R QLT G +L+ H E + ++R +K + + ET +
Sbjct: 278 LINTTETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTNETES 333
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +1
Query: 277 NNFHLITASEYRRLLLYLTSVPSILEA--DMGFHIIVDRRKDRWNSVKTVL 423
+N LIT S Y + Y T + S+L D H + D W +++ L
Sbjct: 224 SNEGLITLSGYIKFWAYFTFIASVLVCFWDESNHQEIANISDMWKTIRAAL 274
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 239 PKTTVPSSPSRTTITFISSPPPSTEDC 319
P T+PSSPS TT F S+P + +C
Sbjct: 694 PVKTIPSSPSPTTNIF-SAPLNNITNC 719
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 154 HTPLHGQPQAVPPWCYTSKTSCHPLLSTTSREMTPY 47
H LHG+ + PP T T H +L+ + Y
Sbjct: 528 HLELHGKDRNTPPMAKTFVTYLHRILNAIKETYSGY 563
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 571 DELYEHFERSQLTPDLGGELQ--YSHSEWIQQRIALEKFSTLMKETSTKLDDFMHXI 735
D+ ++ E + P++ L+ + S+W ++ AL+K ++ + K +DF + +
Sbjct: 272 DDQFDLVEEVDVLPNVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLV 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,587
Number of Sequences: 5004
Number of extensions: 64886
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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