Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P15
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0543 + 10427321-10428315,10428440-10429154 33 0.33
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112 33 0.33
04_04_0986 - 29931302-29932834 31 0.77
03_06_0772 - 36162537-36162745,36163131-36163171,36163316-361636... 31 1.3
01_01_1213 - 9769268-9769975 30 1.8
12_01_0387 - 3028922-3029689,3032116-3032832 30 2.3
08_02_1096 - 24280910-24281195,24281326-24281711 30 2.3
04_03_1025 + 21803807-21805249 30 2.3
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 29 3.1
09_04_0505 + 18183203-18183294,18183388-18183436,18183719-181840... 29 3.1
09_02_0531 + 10312743-10313293,10314313-10315030 29 4.1
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503 29 5.4
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 29 5.4
02_05_0808 - 31883413-31883813,31883903-31884377 29 5.4
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 28 7.2
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 28 7.2
03_02_0354 + 7760124-7761407,7762802-7762858 28 7.2
08_02_0425 + 16975143-16975284,16975682-16975765,16977414-169774... 28 9.5
07_03_1556 + 27692770-27694119 28 9.5
02_01_0272 - 1816791-1816902,1817002-1817023,1817771-1817841,181... 28 9.5
01_06_1083 - 34403769-34403774,34403819-34403918,34404235-344043... 28 9.5
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 32.7 bits (71), Expect = 0.33
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +1
Query: 592 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKETS--TKLDDF-MHXIVDCDMGND 759
ER ++ LG L+Y H EW Q + + K S +M ++S TKL DF + +VD D G
Sbjct: 331 ERYKIILGLGSALRYLHEEWEQCVVHGDIKPSNIMLDSSYNTKLGDFGLARLVDHDKGWQ 390
Query: 760 PTQ 768
T+
Sbjct: 391 TTK 393
>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
Length = 254
Score = 32.7 bits (71), Expect = 0.33
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 140 VKRSVMGAAAKATKLAMWESFYCHNTRWPPEDWPKTTVPSSPSRT 274
V+R+ A T WE + N RWP + WP +T ++ +R+
Sbjct: 38 VRRATRPGTAPRTATTAWEVY---NGRWPHQTWPTSTAAAAAARS 79
>04_04_0986 - 29931302-29932834
Length = 510
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 154 DGCGSEGDEARNVGELLLPQYALATGGLAKDHRPLITFPDNNNFHLITASEY-RRLLLYL 330
D G D RN+ L + A+A L+K HR L+T + HL+ + R + YL
Sbjct: 45 DAGGMCDDVLRNIFSRLPARAAVACTALSKHHRRLVTGAEFRRLHLLLGAPLPRPHVAYL 104
Query: 331 TSVPSILEAD 360
+ P D
Sbjct: 105 ATAPITRRGD 114
>03_06_0772 -
36162537-36162745,36163131-36163171,36163316-36163600,
36163710-36163813,36163924-36164021,36165039-36165213,
36166429-36166578,36167113-36167193,36167246-36167299,
36167422-36167679
Length = 484
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 236 WPKTTVPSSPSRTTITFISSPPPSTEDCCSTSPLC 340
+P + P+ P R PPS CCS+SP+C
Sbjct: 14 FPAPSTPTPPPRQLSPRPHHIPPSLVRCCSSSPVC 48
>01_01_1213 - 9769268-9769975
Length = 235
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 248 WSLASPPVASAYCGSKSSPT 189
W+ +P AS+YCGS +SPT
Sbjct: 41 WASMAPSSASSYCGSAASPT 60
>12_01_0387 - 3028922-3029689,3032116-3032832
Length = 494
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 148 PLHGQPQAVPPWCYTSKTSCHPLLSTTSREMTP 50
P HG Q P TS + P+LS +SRE P
Sbjct: 105 PRHGAQQQAPAAAGTSAAAVSPVLSLSSREAAP 137
>08_02_1096 - 24280910-24281195,24281326-24281711
Length = 223
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +1
Query: 175 DEARNVGELLLPQYALATGGLAKDHRPLITFPDNNNFHLITASEY-RRLLLYLTSVPSIL 351
D RN+ L + A+A+ L+ HR LIT PD H + R + Y+ + P +
Sbjct: 36 DVVRNIFARLPARDAVASMALSWHHRRLITSPDFVRLHCRHGAPLPRPHIAYVATAPVVT 95
Query: 352 EADM 363
DM
Sbjct: 96 HRDM 99
>04_03_1025 + 21803807-21805249
Length = 480
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 210 WQ*KLSHIASFVAFAAAPITLRFTGSRKPFRLGA 109
+Q SH+ S AF + PIT RF S P R GA
Sbjct: 110 YQYDCSHLLSLPAFPSHPITSRFLASLAPPRPGA 143
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 454 IHAVYVLRPSSFLQKALSEVSSKLFKEEFRFKVLVCSTVDELYEHFERSQLT-PD 615
+HA+YVL P+ L+ A+ + + E ++ KV+ + L+ + R QLT PD
Sbjct: 516 LHAIYVLHPTLGLRTAILAMQMFVDGEVWK-KVVYVDRLVHLFRYVPREQLTIPD 569
>09_04_0505 +
18183203-18183294,18183388-18183436,18183719-18184003,
18184914-18185135,18185272-18185421
Length = 265
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Frame = +1
Query: 484 SFLQKALSEVSSKLFKEEFRFKVLVCST--VDELYEHF-ERSQLTPDLGGELQYSHSEWI 654
S LQK L E L E + + VDEL E+ G EL + +
Sbjct: 87 SGLQKKLLEKDEALRSAEHLISRISAANAAVDELRGQLTEKESQIESTGSELHGAKIQLA 146
Query: 655 QQRIALEKFSTLMKETSTKLDDFMHXIVDCDM 750
+++ ALEK K +STK+++ + D+
Sbjct: 147 EKQAALEKLEWEAKVSSTKVEELQVDVASMDV 178
>09_02_0531 + 10312743-10313293,10314313-10315030
Length = 422
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 592 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKETS--TKLDDF 723
ER ++ LG L+Y H EW Q + + K S +M ++S TKL DF
Sbjct: 183 ERYKIIMGLGAALRYLHQEWEQCILHGDIKPSNIMVDSSYNTKLGDF 229
>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
Length = 685
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1
Query: 592 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKETS--TKLDDF 723
ER ++ LG L Y H EW Q + + K S +M ++S TKL DF
Sbjct: 453 ERYKIIIGLGSALHYLHQEWEQCVVHGDIKPSNIMLDSSYNTKLGDF 499
>08_01_0114 -
900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +1
Query: 358 DMGFHIIVDRRKDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQKALS--EVSSKLFK 531
D+ H V R R N L+ + E + + +R +S Q+ S + SK
Sbjct: 687 DLRIHHFVVRLPSR-NCGTEELIMVFEAGDVSMQSKDTVRDASRTQERNSFLDYISKTLP 745
Query: 532 EEFRFKVLVCSTVDELYEHFERSQLTPD 615
F +L+ +D+LY HFE L PD
Sbjct: 746 SNFSDDLLIGVKLDDLYNHFEVKVLMPD 773
>02_05_0808 - 31883413-31883813,31883903-31884377
Length = 291
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -3
Query: 256 GDGGLWPVLRWPARIVAVKALPHCELRRLRCR--THHTPLHGQPQAVPPWC 110
GD G R P V L L R R R + H P H +PQ PPWC
Sbjct: 18 GDSGGGARARLPGAGVRPHQLHDALLHRPRRRRPSRHFPPH-RPQPPPPWC 67
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 28.3 bits (60), Expect = 7.2
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 7/109 (6%)
Frame = +1
Query: 400 WNSVKTVLLRIS---EFFPGIIHAVYVLRPSSFLQKALSEVSSKLFKEEF----RFKVLV 558
WN V L R S +F P I A + + FL+ L K++ +EF R V
Sbjct: 232 WNFVNDGL-RTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEV 290
Query: 559 CSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETS 705
+ + ELYE +Q P G E + S + QR++++ T + S
Sbjct: 291 SNQMLELYEQNCAAQAQPSHGNEAEGSSASVPNQRVSVKSEETPLPHQS 339
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 433 SEFFPGIIHAVYVLRPSSFLQKALSEVSSKLF-KEEFRFKVLVCSTVDELYEHFERSQLT 609
S+++P +H +YV+ S + + V L K + VL + L E ++S+L
Sbjct: 241 SDYYPETLHQMYVVNAGSGFKLIWNSVKGFLDPKTSSKIHVLGTNYQSRLLEVIDKSELP 300
Query: 610 PDLGG 624
LGG
Sbjct: 301 EFLGG 305
>03_02_0354 + 7760124-7761407,7762802-7762858
Length = 446
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +3
Query: 300 LRVPKT--VALPHLCAFDTRSRYGLPH 374
LR P+ + LP C+FD +YG PH
Sbjct: 241 LRAPRFRFIPLPKACSFDPVGKYGRPH 267
>08_02_0425 +
16975143-16975284,16975682-16975765,16977414-16977496,
16977610-16977652,16978311-16978378,16978954-16979043,
16981444-16981620,16982291-16982354,16982452-16982500,
16983399-16983858
Length = 419
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 345 RRHRGEVEQQSSVLGGGDEMKVIVVREGDEGTVVFGQSSGG 223
R ++G +E+ S + GG E +V+V G +SSGG
Sbjct: 270 RSNQGIMEEDSVISNGGREEEVVVANGSGGGVGGTARSSGG 310
>07_03_1556 + 27692770-27694119
Length = 449
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 107 VAPRRNGLRLPVKRSVMGAAAKATKLAMWESFYCHNTRWPP 229
VAP LR V+R V AA + L +++ Y WPP
Sbjct: 335 VAPVYLALRDEVRRRVGAGAAAVSSLGGFDTCYNTTVAWPP 375
>02_01_0272 -
1816791-1816902,1817002-1817023,1817771-1817841,
1817951-1818063
Length = 105
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 661 RIALEKFSTLMKETSTKLDDFMHXIVDCDMGNDPTQ 768
RI LE FST + + +D + I +C+ N+P +
Sbjct: 50 RICLETFSTSVNALTEPIDIYSEWIDECERVNNPEE 85
>01_06_1083 -
34403769-34403774,34403819-34403918,34404235-34404318,
34404427-34404506,34404614-34404707,34404796-34404887,
34405335-34405425,34405617-34405719,34405919-34406008,
34406154-34406235,34406434-34406481,34406601-34406897,
34406992-34407078,34408047-34408247,34408329-34408533,
34409362-34410152
Length = 816
Score = 27.9 bits (59), Expect = 9.5
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Frame = +1
Query: 457 HAVYVLRPSSFLQKA-----LSEVSSKLFKEEFRFKVLVCSTVDELYE-HFERSQLTPDL 618
H Y++R +F QK L E +S +EF FK++ TVD ++ E ++ T D
Sbjct: 647 HKDYIVRAKAFHQKEETIRKLKEKASFRNPDEFYFKMINSKTVDGIHRPKPEANKYTEDE 706
Query: 619 GGELQYSHSEWIQQRI-----ALEKFSTLMKETSTK 711
L+ +I Q I +EK S+++ E K
Sbjct: 707 LMLLKTKDMGYILQGIQSEKKKIEKLSSMLHELDNK 742
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,467,727
Number of Sequences: 37544
Number of extensions: 500667
Number of successful extensions: 1747
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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