Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P15
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012) 81 7e-16
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19) 51 1e-06
SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 35 0.064
SB_20711| Best HMM Match : Mod_r (HMM E-Value=2.3) 33 0.26
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 30 2.4
SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41) 29 3.2
SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13) 29 4.2
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.2
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12) 29 5.5
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 29 5.5
SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17) 28 7.3
SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_7953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 28 9.6
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 28 9.6
>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
Length = 983
Score = 81.4 bits (192), Expect = 7e-16
Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 2/158 (1%)
Frame = +1
Query: 217 ALATGGLAKDHRPLITF--PDNNNFHLITASEYRRLLLYLTSVPSILEADMGFHIIVDRR 390
A +GG + R +IT P + + SE L+Y T +PS + F ++D
Sbjct: 65 AFLSGGYDRQGRAIITILVPKHEDIDTEKLSE---TLIYFTQIPSEEVLNRKFTFVLDLH 121
Query: 391 KDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQKALSEVSSKLFKEEFRFKVLVCSTV 570
+ W + K +L + E P IH + +++P +F +K S+ S K E V S+
Sbjct: 122 EGTWKAAKALLKTLQEVVPDKIHQIVIIKPDAFWEKRKSDTSIKTTDHE----TTVLSSS 177
Query: 571 DELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFS 684
+L + + + LT D GG L Y H +WIQ+R+ E+F+
Sbjct: 178 SKLTQIADEAHLTRDYGGTLPYDHEDWIQRRVFAERFA 215
>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
Length = 648
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1
Query: 562 STVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDD 720
+++D L + E SQLT LGG L+Y H++W+ R+ALEKF +KLD+
Sbjct: 243 TSLDGLAKFIEPSQLTASLGGTLKYDHTDWLNMRLALEKFLYEAMALLSKLDE 295
>SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/44 (40%), Positives = 28/44 (63%)
Frame = +1
Query: 535 EFRFKVLVCSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRI 666
E FK++ +TV +L ++F+ QLTP+ G Y H +WI+ RI
Sbjct: 585 ECDFKLI--TTVQDLKKYFDADQLTPEFNGTFHYDHDDWIRFRI 626
Score = 34.7 bits (76), Expect = 0.084
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +1
Query: 268 PDNNNFHLITASEYRRLLLYLTSVPSILEADMGFHIIVDRRKD-----RWNSVKTVLLRI 432
PD NN ++ E R+L+Y ++ +GF I+D K + L+
Sbjct: 297 PDWNNVKY-SSIELARILMYFNTILKKDSQKLGFSAILDAEKSGVKRRAIEDITEALICF 355
Query: 433 SEFFPGIIHAVYVL--RPSSFLQKALSEVSSKL-FKEEFRF 546
E PG +H VY++ + S L + +++ +L F+E RF
Sbjct: 356 QESCPGALHIVYIVARKDSPLLMFSTTKIKEQLNFEEGGRF 396
>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
Length = 419
Score = 35.1 bits (77), Expect = 0.064
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -3
Query: 178 RRLRCRTHHTPL-HG--QPQAVPPWCYTSKTSCHPLLSTTSREMTPYTPAKASRHRQTHR 8
R RCR +H+PL HG + Q+ PP S+T+ H LL + ++ +P P + +
Sbjct: 202 REERCRAYHSPLPHGTVRQQSSPPPPRDSQTNNHLLLPQSDKQSSPPPPRDSQTNNHLFP 261
Query: 7 P 5
P
Sbjct: 262 P 262
>SB_20711| Best HMM Match : Mod_r (HMM E-Value=2.3)
Length = 185
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 490 LQKALSEVSSKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIA 669
L KA+ + S +E+ R ++ + S +++L + + LGG+L H W+ Q +A
Sbjct: 34 LLKAVLLILSSFLREKIRERIEILS-IEQLQDRLPIGTIPKSLGGKLNVDHFSWLNQCMA 92
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 225 HRRTGQRPPSPHHLPGQQ*LSSHHRLRVPKTVALPHLCAFDTRSRY 362
H T + S HH+ Q S+HH + P+T + H+ T S Y
Sbjct: 866 HHITTPQTTSTHHITTPQTTSTHH-ITTPQTTSTHHITTPQTTSTY 910
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 225 HRRTGQRPPSPHHLPGQQ*LSSHHRLRVPKTVALPHLCAFDT 350
H T S HH+ Q S+HH + P+T HL +T
Sbjct: 745 HHLTTPETTSTHHISAPQTTSTHH-ITTPQTTCTHHLTTPET 785
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 225 HRRTGQRPPSPHHLPGQQ*LSSHHRLRVPKTVALPHLCAFDTRSRY 362
H T + S HH+ Q S+HH + P+T + H+ T S +
Sbjct: 800 HHITTPQTTSTHHITTPQTTSTHH-ITTPQTTSTHHITTPQTTSTH 844
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 225 HRRTGQRPPSPHHLPGQQ*LSSHHRLRVPKTVALPHLCAFDTRSRY 362
H T + S HH+ Q S+HH + P+T + H+ T S +
Sbjct: 822 HHITTPQTTSTHHITTPQTTSTHH-ITTPQTTSTHHITTPQTTSTH 866
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 225 HRRTGQRPPSPHHLPGQQ*LSSHHRLRVPKTVALPHLCAFDTRSRY 362
H T + S HH+ Q S+HH + P+T + H+ T S +
Sbjct: 844 HHITTPQTTSTHHITTPQTTSTHH-ITTPQTTSTHHITTPQTTSTH 888
>SB_25525| Best HMM Match : ABC1 (HMM E-Value=1.19993e-41)
Length = 1008
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/64 (23%), Positives = 24/64 (37%)
Frame = -3
Query: 202 KALPHCELRRLRCRTHHTPLHGQPQAVPPWCYTSKTSCHPLLSTTSREMTPYTPAKASRH 23
+A P + L C H L + ++ P T SCH S+ +P ++H
Sbjct: 812 QASPVTCTKHLSCHVHQASLLSRAPSISPVTCTKHLSCHVHQSSLLSNALSISPVTCTKH 871
Query: 22 RQTH 11
H
Sbjct: 872 LSCH 875
>SB_50358| Best HMM Match : DSL (HMM E-Value=6.2e-13)
Length = 557
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -3
Query: 154 HTPLHGQPQAVPPWCYTSKTSCHPLLSTTSREMTP 50
HTP +A P T K S PLL+T R TP
Sbjct: 209 HTPTDHPKEAPTPLLTTQKRSPTPLLTTPKRSPTP 243
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 184 ELRRLRCRTHHTPLHGQPQAVPPWCYTSKTSCHPLLSTTSREMTPYTPA 38
E+ C P+HG PW SK SC P + T R T P+
Sbjct: 532 EVEHSHCYRRMCPIHGNYTPWTPWTECSK-SCGPGIRTRERTCTNPPPS 579
>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
Length = 660
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 493 QKALSEVSSKLFKEEFR-FKVLVCSTVDELYEHFERSQLTPDL 618
Q A V + K F F++L+ +++L+EHF +PD+
Sbjct: 509 QLAFFRVDHPMMKAYFATFEILLSEFLNKLHEHFHHESFSPDM 551
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +1
Query: 490 LQKALSEVSSKLFKEEFRFKVLVCSTVDELYEHFERSQLTPDLGGELQYSHSEWIQQRIA 669
L+ LSEV+S+L+K++ + +++ + E + Q DL L S E +
Sbjct: 1528 LEARLSEVTSELYKQQTQNELMELERREFQEELLQTQQRVQDLEASLNISQDEKDRLEEE 1587
Query: 670 LEKFSTLMKETSTKLDDFMHXIVD 741
+ F + E T H +D
Sbjct: 1588 VRSFYKRISELQTSYQACEHEKLD 1611
>SB_6617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Frame = -3
Query: 166 CRTHHTPLHGQPQAV------PPWCYTSKTSCHPLLSTTSREMTPYTPAKAS 29
C T T H QP PP C TS TS P L TS T P S
Sbjct: 57 CLTSMTSTHPQPYLTSITTTEPPLCLTSITSTDPQLCLTSITSTDPRPCLTS 108
>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
Length = 1086
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 136 QPQAVPPWCYTSKTSCHPLLSTTSREMTPYTPAKAS 29
QPQ+VP +S + P LSTTSR PA++S
Sbjct: 684 QPQSVPAQSSSSSANEEP-LSTTSRPQPAQQPAQSS 718
>SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 222 GHRRTGQRPPSPHHLP 269
GH +RPPSPH +P
Sbjct: 278 GHAHQSERPPSPHKVP 293
>SB_7953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 442 FPGIIHAVYVLRPSSFLQKAL-SEVSSKLFKEEFR 543
FP ++ VYVL+P F+Q+ + +SS+ + FR
Sbjct: 3 FPDRVNCVYVLKPQGFMQRFIGGSLSSEDAQAAFR 37
>SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 225 HRRTGQRPPSPHHLPGQQ*LSSHHRLRVPKTVALPHL 335
H R+ + PP P H G+ S LR P T LP+L
Sbjct: 28 HLRSNRAPPHPSHPKGR---SGRSGLRHPPTRTLPYL 61
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 680 NFSKAIRCCIHSECEYC 630
N K+I CC CEYC
Sbjct: 1060 NLRKSINCCCEVTCEYC 1076
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 206 CHNTRWPPEDWPKTTVPSSPSRTTITFISSPPPSTEDCCSTS 331
C +T PP P + P TT ++PP +T ST+
Sbjct: 175 CTDTDIPPPTLPPPPTTTPPPTTTQATTTNPPTTTSTASSTT 216
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,998,309
Number of Sequences: 59808
Number of extensions: 546218
Number of successful extensions: 1748
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1732
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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