Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P15
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.78 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.2  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   7.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 771  GLCGIVSHIAVDYXVHEIVQLRRCLFHKRRKFL*GYSLL 655
            GLCG   H + +    + V  + CLF K   F+  Y+L+
Sbjct: 1596 GLCGNFDHDSTN----DFVGPKNCLFRKPEHFVASYALI 1630



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 685  TLMKETSTKLDDFMHXIVDCDMGNDPTQTK 774
            T +KET  K+   M  +V C  G    +TK
Sbjct: 1692 TQVKETDDKICFTMRPVVSCASGCTAVETK 1721


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = +2

Query: 182 LAMWESFYCHNTRWPPEDWPKTTVPSSPSRTT 277
           ++ WE  Y    + P   + +   P  P RT+
Sbjct: 229 VSQWEEVYIPLYQQPERHYERRATPPQPDRTS 260


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 141 TGSRKPFRLGATLPKLH 91
           T S KPF   ATL +LH
Sbjct: 414 TSSPKPFPRRATLAQLH 430


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +1

Query: 16  FDDGDLP*RACTVSSRGSLLTTKGDMKFWKCST 114
           FD   +P   C V S GS+          KC+T
Sbjct: 139 FDQTGIPPTTCLVFSSGSVSCVPSVKHVAKCAT 171


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 176 TKLAMWESFYCHNTRWPPEDWPKTTVPSSPS 268
           T L + +S+Y +  RW P+++    +   PS
Sbjct: 77  TNLWVEQSWYDYKLRWEPKEYGGVKMLHVPS 107


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 176 TKLAMWESFYCHNTRWPPEDWPKTTVPSSPS 268
           T L + +S+Y +  RW P+++    +   PS
Sbjct: 77  TNLWVEQSWYDYKLRWEPKEYGGVKMLHVPS 107


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +2

Query: 224 PPEDWPKTTVPSSPSRTTITFISSPPPSTEDCCSTSPLCL 343
           PP+    +T  S P     T + S PP        SP+ +
Sbjct: 355 PPKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSM 394


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 674 SKAIRCCIHSECEYCN 627
           S  I+C I+++CE+ N
Sbjct: 57  SYGIKCEIYAKCEFLN 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,880
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)