Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P13
         (369 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2HS59 Cluster: RNA-binding region RNP-1; n=2; Medicago...    38   0.077
UniRef50_Q7R934 Cluster: Putative uncharacterized protein PY0703...    36   0.24 
UniRef50_Q058C0 Cluster: Type III protein export, membrane compo...    32   3.8  
UniRef50_Q95PU8 Cluster: Putative non-ribosomal nucleolar protei...    32   3.8  
UniRef50_Q4CWK3 Cluster: Putative uncharacterized protein; n=2; ...    32   3.8  
UniRef50_A0BY45 Cluster: Chromosome undetermined scaffold_136, w...    32   3.8  
UniRef50_Q2UGQ8 Cluster: Protein required for normal rRNA proces...    31   5.1  
UniRef50_Q5L6K0 Cluster: Polymorphic outer membrane protein; n=4...    31   8.9  
UniRef50_A5Z7K5 Cluster: Putative uncharacterized protein; n=1; ...    31   8.9  
UniRef50_Q5KMN3 Cluster: GTPase, putative; n=2; Basidiomycota|Re...    31   8.9  

>UniRef50_Q2HS59 Cluster: RNA-binding region RNP-1; n=2; Medicago
           truncatula|Rep: RNA-binding region RNP-1 - Medicago
           truncatula (Barrel medic)
          Length = 742

 Score = 37.5 bits (83), Expect = 0.077
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +1

Query: 22  ISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
           ++K+SEP  +KTV  ++K D +E N P  E   ++YE
Sbjct: 246 VAKKSEPEPEKTVESDEKIDLEEENDPEEEMEEIEYE 282


>UniRef50_Q7R934 Cluster: Putative uncharacterized protein PY07033;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY07033 - Plasmodium yoelii yoelii
          Length = 1061

 Score = 35.9 bits (79), Expect = 0.24
 Identities = 12/32 (37%), Positives = 24/32 (75%)
 Frame = +1

Query: 151 NSYLFKLILMNINLNYRAKFVVKTYVYFINKY 246
           NSY+ +++ ++ N+ Y+  F++  +VY+INKY
Sbjct: 35  NSYISQILYISKNIYYKNSFLIYLFVYYINKY 66


>UniRef50_Q058C0 Cluster: Type III protein export, membrane
           component; n=1; Buchnera aphidicola str. Cc (Cinara
           cedri)|Rep: Type III protein export, membrane component
           - Buchnera aphidicola subsp. Cinara cedri
          Length = 266

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 151 NSYLFKLILMNINLNYRAKFVVKTYVYFINKY 246
           N YLF  ILMN+ LNY  K ++K + Y   KY
Sbjct: 236 NFYLFNKILMNVFLNYFKKNIIKKF-YISLKY 266


>UniRef50_Q95PU8 Cluster: Putative non-ribosomal nucleolar protein;
           n=1; Chironomus tentans|Rep: Putative non-ribosomal
           nucleolar protein - Chironomus tentans (Midge)
          Length = 513

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 1   RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
           +PA + ++ KQ+ PAKKK    E++ D +E   PA
Sbjct: 166 KPAVKPAVQKQAAPAKKKESSSEEESDEEELAKPA 200


>UniRef50_Q4CWK3 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 472

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 1   RPADEASISKQSEPAKKKTVVPEDKFDSDES 93
           +PA +A  S    PA KKT VP+   D D++
Sbjct: 162 KPAQKAKASPAMRPAPKKTAVPDSSSDDDDA 192



 Score = 31.1 bits (67), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   RPADEASISKQSEPAKKKTVVPEDKFDSDES 93
           +PA +A  S    PA KK  VPE   D D++
Sbjct: 230 KPAQKAKASPAMRPAPKKAAVPESSSDDDDA 260



 Score = 31.1 bits (67), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   RPADEASISKQSEPAKKKTVVPEDKFDSDES 93
           +PA +A  S    PA KK  VPE   D D++
Sbjct: 298 KPAQKAKASPAMRPAPKKAAVPESSSDDDDA 328


>UniRef50_A0BY45 Cluster: Chromosome undetermined scaffold_136,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_136,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 815

 Score = 31.9 bits (69), Expect = 3.8
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 10  DEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKKINSYLFKLILMNI- 186
           D    S +SE   K+  V E KFD D           ++Y++ K+K+N   FK ++ N+ 
Sbjct: 107 DNIKNSNKSEIQFKEQSVEELKFDQDFETLSIHYKGNLNYDIPKEKVNIDEFKELMENVQ 166

Query: 187 -NLNYRA 204
             L+Y A
Sbjct: 167 SQLSYMA 173


>UniRef50_Q2UGQ8 Cluster: Protein required for normal rRNA
           processing; n=18; Fungi/Metazoa group|Rep: Protein
           required for normal rRNA processing - Aspergillus oryzae
          Length = 681

 Score = 31.5 bits (68), Expect = 5.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 16  ASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVD 126
           AS+++Q E  + +    E++ DSDE    AT+G  VD
Sbjct: 492 ASLAEQEEEGEAEIAAEEEEEDSDEEMEEATDGKKVD 528


>UniRef50_Q5L6K0 Cluster: Polymorphic outer membrane protein; n=4;
            Chlamydophila|Rep: Polymorphic outer membrane protein -
            Chlamydophila abortus
          Length = 953

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 106  TEGSTVDYEL*KKKINSYLFKLILMNINLNYRAKFVVKTYVYFIN 240
            T G+ VDY      IN+ +     M++++NYR  F   T   F+N
Sbjct: 902  TSGTPVDYHAGSVTINNTISFFNKMSLSINYRGDFSKSTLCNFLN 946


>UniRef50_A5Z7K5 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 684

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 145 KINSYLFKLILMNINLNYRAKFVVKTYVY 231
           K+ S +F L+++ + +NY+ K+  K Y+Y
Sbjct: 273 KLESKVFNLLILCMKINYKKKYTNKKYIY 301


>UniRef50_Q5KMN3 Cluster: GTPase, putative; n=2; Basidiomycota|Rep:
           GTPase, putative - Cryptococcus neoformans
           (Filobasidiella neoformans)
          Length = 1228

 Score = 30.7 bits (66), Expect = 8.9
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 1   RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
           +PA++A+ S Q++PA K    P  K +   + APA E S+ + E
Sbjct: 536 KPAEKAAASTQTQPAPKAASAPA-KANGKPAPAPAEESSSEEEE 578


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,515,672
Number of Sequences: 1657284
Number of extensions: 2326429
Number of successful extensions: 9092
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9084
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13647406432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)