Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P13
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   1.6  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    25   3.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   4.9  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    24   6.5  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    24   6.5  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 7   ADEASI--SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
           +D +SI   K  +P K K ++P+ +FD D      TE     +E
Sbjct: 43  SDTSSILFDKNKKPLKPKIIIPDKEFDLDYYLKDETESIQSPFE 86


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 16  ASISKQSEP-AKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKKINSYLF 165
           AS++  + P A    V+PE K    ++N+     STV  EL K++  S+ F
Sbjct: 227 ASVAASTAPKAASPAVLPEGKPRRRKNNSQMRFCSTVLKELYKRQYESFAF 277


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +1

Query: 10   DEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
            +++   +  EP +KK+    D+FD +E +      +  D+E
Sbjct: 1392 EDSEDEEDEEPKRKKS--KSDRFDDEEKDLDEIPSTAADFE 1430


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 25  SKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL 135
           +K S+PA +  V+P   F S  S  P+ EG+  +  L
Sbjct: 284 TKNSKPAGQ--VIPSSPFTSTLSRFPSLEGAVSEISL 318


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 7   ADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
           +DE  + + S  +  + +  +DKFD +  N P        YE
Sbjct: 284 SDETKLKQSSTESSSELLDEKDKFDKNSLNDPFVTIRKSSYE 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,549
Number of Sequences: 5004
Number of extensions: 10538
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)