Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P13
         (369 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   0.89 
SB_58884| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-29)                 29   0.89 
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.7  
SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)                   27   4.8  

>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 10   DEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
            D +S+  +++ ++ KT   ED+F+S E N    E ST   E
Sbjct: 2475 DPSSMEGKTDISESKTYTMEDEFESKEGNTDIKERSTAAKE 2515


>SB_58884| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-29)
          Length = 640

 Score = 29.5 bits (63), Expect = 0.89
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +1

Query: 13  EASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KKKINSYLFKLILMNINL 192
           + S+S+QS P    T   ED F S  S A A   S+      KK+I+    + +L   N 
Sbjct: 532 QKSVSRQSSP----TSHDEDLFSSSVSKAKAYNDSSFGKAASKKRIHRTSQESVLYGSNE 587

Query: 193 NYRAKFVVKTYVYFINKYSFSV 258
           N +   + K        Y FSV
Sbjct: 588 NVKQLILCKVARMLDYIYDFSV 609


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 7    ADEASISKQSEPAKKKTVVPEDKFDSDESNAPAT 108
            A E +++++S  A + TV PE  ++ + + AP T
Sbjct: 2750 AAETTVAQESTVASETTVAPETTYEPETTAAPGT 2783


>SB_11869| Best HMM Match : Excalibur (HMM E-Value=8)
          Length = 269

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 4   PADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYE 132
           P +EA    ++   K++   P+D+  + E  A ATEG++   E
Sbjct: 133 PTEEAPSRDEAAAPKQEEEAPKDEAAASEEVAAATEGTSAATE 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,398,745
Number of Sequences: 59808
Number of extensions: 67370
Number of successful extensions: 332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 594991920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)