Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P13
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical pr... 29 1.4
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 27 3.2
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 27 3.2
AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical ... 27 4.2
Z73102-12|CAA97406.1| 430|Caenorhabditis elegans Hypothetical p... 26 9.7
>Z96102-2|CAI79216.1| 746|Caenorhabditis elegans Hypothetical
protein H39E23.3 protein.
Length = 746
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S++ PAK+++ P+ + E NAPA
Sbjct: 133 KPKTESADSEKKAPAKRESDKPKTESADSEKNAPA 167
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S++ PAK++ P+ + E NAPA
Sbjct: 533 KPKTESADSEKKAPAKREADPPKTESADSEKNAPA 567
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S++ PAK++ P+ + E NAPA
Sbjct: 653 KPKTESADSEKKAPAKREADPPKTESADSEKNAPA 687
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 4 PADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
P E++ S++ P K+++ P+ + E NAPA
Sbjct: 54 PKTESADSEKKAPTKRESDKPKTESADSEKNAPA 87
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S+++ PAK++ P+ + E APA
Sbjct: 73 KPKTESADSEKNAPAKREADKPKTESADSEKKAPA 107
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGS 117
+P E++ S++ PAK++ P+ + E APA S
Sbjct: 113 KPKTESADSEKKAPAKREADKPKTESADSEKKAPAKRES 151
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S+++ PAK++ P+ + E APA
Sbjct: 153 KPKTESADSEKNAPAKREADKPKTESADSEKKAPA 187
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGS 117
+P E++ S++ PAK++ P+ + E APA S
Sbjct: 193 KPKTESADSEKKAPAKREADKPKTESADSEKKAPAKRES 231
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S++ PAK++ P+ + E APA
Sbjct: 93 KPKTESADSEKKAPAKREADKPKTESADSEKKAPA 127
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S++ PAK++ P+ + E APA
Sbjct: 173 KPKTESADSEKKAPAKREADKPKTESADSEKKAPA 207
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 1 RPADEASISKQSEPAKKKTVVPEDKFDSDESNAPA 105
+P E++ S++ PAK++ P+ + E APA
Sbjct: 573 KPKTESADSEKKAPAKREADPPKTESADSEKKAPA 607
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 7 ADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KK 144
+D +S + + KKKT+ PE ++ N A E ST+ + L +K
Sbjct: 53 SDTSSAAPKKTTVKKKTMAPE---WNEHLNVHANESSTISFRLLQK 95
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 7 ADEASISKQSEPAKKKTVVPEDKFDSDESNAPATEGSTVDYEL*KK 144
+D +S + + KKKT+ PE ++ N A E ST+ + L +K
Sbjct: 53 SDTSSAAPKKTTVKKKTMAPE---WNEHLNVHANESSTISFRLLQK 95
>AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical
protein W02F12.3 protein.
Length = 388
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 34 SEPAKKKTVVPEDKFDSDESNAPATEG 114
SEP + PED D D+SN P+T G
Sbjct: 297 SEPQNRPPSRPED--DDDDSNKPSTSG 321
>Z73102-12|CAA97406.1| 430|Caenorhabditis elegans Hypothetical
protein B0035.11 protein.
Length = 430
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 28 KQSEPAKKKTVVPEDKFDSDESNAP 102
K+ EP+KK+ ++ E D D AP
Sbjct: 33 KKQEPSKKRAILNESDDDDDSRPAP 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,264,213
Number of Sequences: 27780
Number of extensions: 59508
Number of successful extensions: 274
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -