Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P11
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 30 0.41
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 29 0.54
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 29 0.71
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 29 0.94
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M... 28 1.2
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 28 1.6
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 28 1.6
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 28 1.6
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 2.2
SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.2
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 27 2.9
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 27 2.9
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 5.0
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 5.0
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 6.6
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 6.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 6.6
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom... 26 6.6
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 8.8
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.8
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 25 8.8
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +2
Query: 557 RVAVVGNVDAGKSTLLGVLTHGEL 628
R+AV+G AGKSTL+ VLT GEL
Sbjct: 702 RIAVIGPNGAGKSTLIKVLT-GEL 724
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 29.5 bits (63), Expect = 0.54
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLT 616
M+ RVA+VG GKSTLL ++T
Sbjct: 415 MDSRVAIVGKNGTGKSTLLNLIT 437
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGR 694
+ + V G+VD+GKST+LG + EL + Q+L H SG+
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMF-ELGEINSRSMQKL--HNEAANSGK 221
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 497 GLTGQYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLT 616
GLTG+ L EL+ EI +VG +AGKSTLL LT
Sbjct: 221 GLTGEQKL-IELELKTICEI--GLVGLPNAGKSTLLNCLT 257
>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTHGELDNGRGY 646
+++ +VG + GKSTL +LT L N Y
Sbjct: 46 LKIGIVGMPNIGKSTLFQILTKTNLGNPANY 76
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTH 619
I V V+G+VD+GKST G L +
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIY 29
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTH 619
I V V+G+VD+GKST G L +
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIY 29
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTH 619
I V V+G+VD+GKST G L +
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIY 29
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 500 LTGQYLLRTELDNNDFMEIRVAVVGNVDAGKSTL-LGVLTHGELDN-GRGYARQRLFRHK 673
L G+Y L + + + ++ + + A+VGN+D +TL L H L N G+G + R +
Sbjct: 48 LLGKYDLSSPILSLEYTDEKTALVGNLDGTVTTLDLNTRNHEFLGNHGKGVSCISKLRLE 107
Query: 674 HXMESG 691
+ SG
Sbjct: 108 NCFISG 113
>SPBC146.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 404 PLLSPDHLLHVQYHK*SRHFQXQAFPIAVYGVTHTHQHLDSPS 276
PLLSP L +++HK S Q + +G++ H SPS
Sbjct: 93 PLLSPISPLKLRFHKYSVSKQLNSVGKQGFGLSSNHSRYASPS 135
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 557 RVAVVGNVDAGKSTLLGVLTHGEL 628
++ + G+++AGKSTL L H ++
Sbjct: 156 KILITGDLNAGKSTLCNALVHKDI 179
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 546 LWRLEWLWWVTWTLASPRCSGSSRTE-NWTTV 638
LW L W+W++ L P+ ++ E NW V
Sbjct: 455 LWSLVWMWFMILMLLFPQYQKPNQDEMNWAIV 486
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLG 607
+ + +G+VDAGKSTL G
Sbjct: 239 VNIVFIGHVDAGKSTLGG 256
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 164 KVKMDSVPESPIKAISLTEDEAFVESETD 250
K+K + + ++ SL E EAF E+ETD
Sbjct: 893 KLKAKQLLDRMLRVFSLKELEAFAENETD 921
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVL 613
M+ R+ VVG AGKST+L +L
Sbjct: 543 MDSRIGVVGPNGAGKSTMLKLL 564
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 509 QYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELD 631
QY+ R D+ DFME+ ++ + G + V H +LD
Sbjct: 256 QYI-RHFFDSRDFMEVETPMMNMIAGGATAKPFVTHHNDLD 295
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 557 RVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRH 670
RVA++G AGKSTL+ VL GE+ G ++F+H
Sbjct: 721 RVAILGPNGAGKSTLIKVLI-GEVIPQEG----KVFKH 753
>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 350 GEIIYDIGHGEDGRGLTEDEYNASLATLHSLVAS 451
G ++Y+IG E+ D+Y SL T+ + AS
Sbjct: 104 GVLLYEIGELEEHMVDRYDQYRVSLKTIRDIEAS 137
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = -1
Query: 338 QAFPIAVYGVTHTHQHLDSPSPSSL*YWNNLFRFLRRLHPQL 213
QAFP +LD+P SS YW F L H L
Sbjct: 233 QAFPSESLDEPDYTINLDAPRSSSGKYWKQKFSMLDSAHSDL 274
>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 184 YAVHFYFPNYLNSVR-TLELHCYSLHYVIRRHKGKQRTTFRNVSYLLFY 41
Y + Y ++ N VR ++ S+H+ + K K FR Y LF+
Sbjct: 26 YTPYTYIVSFHNFVRFPIKQRNTSIHHAPNKRKRKDEAPFRLCIYTLFH 74
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 8.8
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 461 SCVELRRWECGSGLTGQYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGR 640
S V L + +T Q + +L F + V VVG +GKSTL+ L L + +
Sbjct: 5 SAVTLNNYVGFDSITSQ--INRKLIRRGF-QFNVMVVGPSGSGKSTLINTLFSAHLMDSK 61
Query: 641 G 643
G
Sbjct: 62 G 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,160
Number of Sequences: 5004
Number of extensions: 61564
Number of successful extensions: 181
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -