Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P11
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1614 - 28243532-28244589,28245149-28245383,28245524-282457... 34 0.14
09_06_0365 - 22582467-22583524,22584407-22584641,22585474-225856... 33 0.24
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141 33 0.32
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 32 0.43
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 32 0.43
03_04_0206 - 18493178-18495310 31 0.98
03_05_0990 - 29503950-29504462,29504567-29504686,29514956-295150... 31 1.3
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 30 2.3
03_06_0408 - 33722741-33722893,33723174-33723350,33723798-337239... 29 3.0
02_05_1104 + 34146610-34146614,34147108-34147231,34147480-341475... 29 3.0
02_05_1101 + 34122061-34122065,34122559-34122682,34122931-341229... 29 3.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 4.0
03_05_0292 + 22846273-22846377,22847161-22847823 29 4.0
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156... 28 9.2
01_05_0703 - 24404580-24406373 28 9.2
>08_02_1614 -
28243532-28244589,28245149-28245383,28245524-28245734,
28245834-28245907,28246465-28246665
Length = 592
Score = 33.9 bits (74), Expect = 0.14
Identities = 25/64 (39%), Positives = 33/64 (51%)
Frame = +2
Query: 485 ECGSGLTGQYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLF 664
E G T L+ LD ++ R+A+VG AGKSTLL ++T G+L G R
Sbjct: 381 EVSFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMT-GDLAPLDGMVR---- 435
Query: 665 RHKH 676
RH H
Sbjct: 436 RHNH 439
>09_06_0365 -
22582467-22583524,22584407-22584641,22585474-22585684,
22585775-22585848,22585943-22586092
Length = 575
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/60 (41%), Positives = 32/60 (53%)
Frame = +2
Query: 497 GLTGQYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKH 676
G T L+ LD ++ RVA+VG AGKSTLL ++T G+L G R RH H
Sbjct: 368 GYTPDNLIYKNLDFGVDLDSRVALVGPNGAGKSTLLKLMT-GDLIPLDGMVR----RHNH 422
>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
Length = 606
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/54 (44%), Positives = 30/54 (55%)
Frame = +2
Query: 494 SGLTGQYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQ 655
+G T + +D + M RVAVVG AGKSTLL +L GEL G AR+
Sbjct: 382 AGFTRGGFQLSAIDADVSMGQRVAVVGPNGAGKSTLLKLLA-GELTPTSGEARR 434
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 551 EIRVAVVGNVDAGKSTLLGVLTH 619
++ +A+VG+VD+GKSTL G L H
Sbjct: 247 QLNLAIVGHVDSGKSTLSGRLLH 269
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 32.3 bits (70), Expect = 0.43
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 551 EIRVAVVGNVDAGKSTLLGVLTH 619
++ +A+VG+VD+GKSTL G L H
Sbjct: 247 QLNLAIVGHVDSGKSTLSGRLLH 269
>03_04_0206 - 18493178-18495310
Length = 710
Score = 31.1 bits (67), Expect = 0.98
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQ 655
M RVA+VG AGKSTLL +L G+L +G R+
Sbjct: 509 MGTRVAIVGPNGAGKSTLLNLLA-GDLTPTKGEVRR 543
>03_05_0990 -
29503950-29504462,29504567-29504686,29514956-29515012,
29515635-29515689,29515765-29515845,29515928-29515983,
29516112-29516256,29516347-29516415,29517355-29517467,
29517619-29517708,29518112-29518176,29519256-29519667
Length = 591
Score = 30.7 bits (66), Expect = 1.3
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Frame = +2
Query: 344 GNGEIIYDIGHGEDGRGLTEDEYNASLATLHSLVASERVSCVELRRWECGSGLTGQYLLR 523
G E++ G G GRG L + RV L + E
Sbjct: 218 GEAEVVSARGRGSGGRGFISGAGETELQLQRRRIQECRVRL--LAQIEDVRRTRAIQRSN 275
Query: 524 TELDNNDFME--IRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLF 664
+ N F + + VAVVG +AGKSTL+ L+ +L Y+ RLF
Sbjct: 276 RKRHGNSFGQELVTVAVVGYTNAGKSTLVSALSETDL-----YSDDRLF 319
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 531 LTIMTLWRLEWLWWVTWTLASPRCSGSSRTENWTTVE 641
L + W +W W LA+P SG RTE+W E
Sbjct: 122 LQYLVKWGSQWEGGA-WDLAAPELSGRIRTEDWKDQE 157
>03_06_0408 -
33722741-33722893,33723174-33723350,33723798-33723947,
33724085-33724145,33724338-33724558
Length = 253
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTHGEL-DNGRGYAR 652
+++RVAV+G+ GKS+L+ + G D G AR
Sbjct: 13 LDVRVAVIGDHGTGKSSLVATIATGRFPDQDDGVAR 48
>02_05_1104 +
34146610-34146614,34147108-34147231,34147480-34147514,
34149924-34150269
Length = 169
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 398 TEDEYNASLATLHSLVASERVSCVELRRWECGSG 499
T Y A++ S ++CVE +RW CGSG
Sbjct: 23 TIGSYTATITECTSGPPLFSLACVEKKRWNCGSG 56
>02_05_1101 +
34122061-34122065,34122559-34122682,34122931-34122965,
34125375-34125720
Length = 169
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 398 TEDEYNASLATLHSLVASERVSCVELRRWECGSG 499
T Y A++ S ++CVE +RW CGSG
Sbjct: 23 TIGSYTATITECTSGPPLFSLACVEKKRWNCGSG 56
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 610 DPEQRGLASVHVTHHSHSNLHKVIIVKLRPKEVLAGE 500
D +RG + HHSHS+ H+ +L E+L GE
Sbjct: 35 DKGERGHHTTSNNHHSHSHSHRKHHAELEEGELLNGE 71
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +3
Query: 549 WRLEWLWWVTWTLASPRCSGSSRTENWTTVEGMHDR-GCSATNTXWRAGGPXPWGTTYW 722
WR +W W S C G R ++ +G D GC A G P+ W
Sbjct: 161 WRRQWSWRRRRRRRSRMCGGGGRRGRGSSTQGGGDACGCMAEFAEVADGAVTPFARPRW 219
>08_01_0186 -
1561695-1561958,1562041-1562183,1562260-1562326,
1562417-1562529,1562603-1562671,1563831-1563870,
1563965-1564035,1565872-1566027,1566104-1566152,
1566228-1567631
Length = 791
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -2
Query: 646 IPSTVVQFSVREDPEQRGLASVHVTHHSHSNLHKVIIVKLRPKEVLAGEPTSTLPPPQ 473
+PS +FSVR +P Q+G + + K + K++ E ST P Q
Sbjct: 267 LPSLDDKFSVRREPSQKGAVKKDTIEKDYPSEKKHSTKGVHKKDMFKKEDASTKPALQ 324
>01_05_0703 - 24404580-24406373
Length = 597
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +2
Query: 560 VAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGRTXSVGNDI 718
VA+VG AGK+TLL VL G D R A + L + M++ R V +
Sbjct: 65 VAIVGPSGAGKTTLLSVLA-GSADPARVVAGEVLVNGR-AMDAARFRRVSGHV 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,154,565
Number of Sequences: 37544
Number of extensions: 431316
Number of successful extensions: 1326
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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