Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P11
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 180 1e-45
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 1e-25
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_14067| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0) 28 7.1
SB_45632| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66) 28 7.1
SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24) 28 9.4
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 28 9.4
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_23029| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 28 9.4
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 180 bits (438), Expect = 1e-45
Identities = 93/180 (51%), Positives = 117/180 (65%), Gaps = 3/180 (1%)
Frame = +2
Query: 215 TEDEAFVESETDYSSIXG--KMVMVSPNADXXXXXXXXXXXXXXXGNGEIIYDIGHGED- 385
T++E F E + + G ++ +VSP+ G+GE IY++G G+
Sbjct: 114 TDNELFEEEDVNGQHDLGDPRLALVSPDELGFDVLLSRLKQRLSIGHGETIYEVGVGDGT 173
Query: 386 GRGLTEDEYNASLATLHSLVASERVSCVELRRWECGSGLTGQYLLRTELDNNDFMEIRVA 565
GL ++ +AS+ATL +L + + LR G G+YL+R +D NDFME+RVA
Sbjct: 174 SSGLDPEDLHASVATLKTLAEACNADAMLLREKTAELGTVGEYLVRVRMDENDFMEVRVA 233
Query: 566 VVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGRTXSVGNDILGFDNMGML 745
VVGNVDAGKSTLLGVLTHGELDNGRG ARQRLFRHKH MESGRT SVGNDILGFDN G +
Sbjct: 234 VVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDNTGQV 293
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 113 bits (272), Expect = 1e-25
Identities = 63/135 (46%), Positives = 87/135 (64%), Gaps = 3/135 (2%)
Frame = +2
Query: 344 GNGEIIYDIGHGEDGR--GLTEDEYNASLATLHSLVASERVSCVELRRWECGS-GLTGQY 514
G GE IY IG ++G GL E E +SLATL+++ + + LR+ +
Sbjct: 40 GQGEAIYGIGVEDNGGLVGLPEKELKSSLATLNTMASKLGATTSILRQRNVEEMRKVVEV 99
Query: 515 LLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGR 694
L+R D+ F +IR+AV+GNV++GKSTLLGVLT+ ELDNG+G AR LFRH H ++SGR
Sbjct: 100 LVRQVPDDQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGR 159
Query: 695 TXSVGNDILGFDNMG 739
T S+ ++ILGF G
Sbjct: 160 TSSISHEILGFSCTG 174
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 551 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRG 643
E R+AVVG+ +GK+TLL +L GEL+ +G
Sbjct: 364 ESRIAVVGDNGSGKTTLLKILL-GELEPVKG 393
>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 560 VAVVGNVDAGKSTLLGVLTHGELDNGRG 643
VAVVG V GKSTLL L GE + +G
Sbjct: 306 VAVVGQVGCGKSTLLSALL-GETEKTKG 332
>SB_1645| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +2
Query: 551 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGY-----ARQRLFRHKHXMESGRT 697
++R+AVVG+ GK++L+ ++ H E + + +L+ +K M G+T
Sbjct: 6 KVRIAVVGDSGVGKTSLVHLICHEESISSAAWTIGCTVEVKLYDYKEGMPGGKT 59
>SB_14067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/43 (48%), Positives = 23/43 (53%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKH 676
+E RVA+VG AGKSTLL L G L G R RH H
Sbjct: 85 LESRVALVGPNGAGKSTLL-KLIEGLLSPTEGIVR----RHSH 122
>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
Length = 883
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +2
Query: 512 YLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESG 691
Y L D F+E + VG +A L VLT G++ + RL + H ++ G
Sbjct: 31 YKLVKVADVESFIERCMTKVGTTEAHARQLGQVLTAGDVRGHFSHGLNRLEMYVHDIQEG 90
Query: 692 RTXSVG 709
T G
Sbjct: 91 TTVYTG 96
>SB_45632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -3
Query: 750 IHNIPILSKPNMSFPTEXVLPLSXSCLWRNSLCRAYPRPLSSSPCVRTP 604
IH P KP S P ++ + L + SL PR L SP + P
Sbjct: 11 IHRKPNHRKPGASLPVTVIVSRTHIALAKQSLQWPVPRFLEPSPLLEVP 59
>SB_18661| Best HMM Match : Keratin_B2 (HMM E-Value=0.66)
Length = 184
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -1
Query: 497 HFHTPTSSAQHMTLSHLPPMNEALLGTHCIHPLLSPDHLLHVQY 366
H P ++ H T + P + TH HP +P H H Q+
Sbjct: 57 HAQHPCTTPMHNTYAQ-HPCTTPMHNTHAQHPCTTPTHNSHAQH 99
>SB_48651| Best HMM Match : ABC_tran (HMM E-Value=2.1e-24)
Length = 569
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 530 LDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGEL 628
+DN+ F +A+VG V AGKS+LL + GEL
Sbjct: 148 IDNSYFKGELLAIVGPVGAGKSSLLMAIL-GEL 179
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
+ I + V+G+VD+GKST G L +
Sbjct: 6 IHINIVVIGHVDSGKSTTTGHLIY 29
>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 311 VTHTHQHLDSPSPSSL*YWNNLFRFLRRLHPQL 213
+T HQH P+ S+L NN++ + + H Q+
Sbjct: 51 ITQQHQHYHHPTTSTLPSPNNIYTTITQQHQQI 83
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +2
Query: 560 VAVVGNVDAGKSTLLGVLTHGELDNGRG 643
VAVVG V GKSTLL L GE + G
Sbjct: 577 VAVVGQVGCGKSTLLSALL-GETEKVTG 603
>SB_23029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 539 NDFMEIRVAVVGNVDAGKSTLL 604
+D +I VA+ GN+ +GK+TLL
Sbjct: 133 HDMRKITVAIEGNIGSGKTTLL 154
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 187 WYAVHFYFPNYLNSVRTLELHCYSLHYVIRRHK 89
WY H+++P Y R CY HY RH+
Sbjct: 40 WYRHHYHYPCY----RHYYHRCYRHHYCCYRHR 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,609,535
Number of Sequences: 59808
Number of extensions: 475376
Number of successful extensions: 1237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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