Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P11
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 121 6e-28
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 121 6e-28
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 112 2e-25
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 30 1.5
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 30 1.5
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 30 1.5
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 30 1.5
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 29 2.7
U88314-1|AAF99885.1| 342|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical ... 28 6.2
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 28 8.2
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 28 8.2
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 28 8.2
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 28 8.2
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 28 8.2
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr... 28 8.2
U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical pr... 28 8.2
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ... 28 8.2
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ... 28 8.2
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 121 bits (291), Expect = 6e-28
Identities = 67/119 (56%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Frame = +2
Query: 392 GLTEDEYN-ASLATLHSLVASERVSCVELRRWECGSG--LTGQYLLRTELDNNDFMEIRV 562
GL+E++ + A+ A L L V +RR + G G T +++R DF+E RV
Sbjct: 84 GLSEEDLDKAADAQLKILEKIPAVGTKVIRRKQTGGGSLFTEVWIIRDPPTEKDFIEARV 143
Query: 563 AVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGRTXSVGNDILGFDNMG 739
AVVGNVDAGKSTLLGVLTH LD+GRG AR +LFRHKH ESGRT SVGNDILGFD G
Sbjct: 144 AVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSVGNDILGFDVHG 202
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 121 bits (291), Expect = 6e-28
Identities = 67/119 (56%), Positives = 80/119 (67%), Gaps = 3/119 (2%)
Frame = +2
Query: 392 GLTEDEYN-ASLATLHSLVASERVSCVELRRWECGSG--LTGQYLLRTELDNNDFMEIRV 562
GL+E++ + A+ A L L V +RR + G G T +++R DF+E RV
Sbjct: 84 GLSEEDLDKAADAQLKILEKIPAVGTKVIRRKQTGGGSLFTEVWIIRDPPTEKDFIEARV 143
Query: 563 AVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGRTXSVGNDILGFDNMG 739
AVVGNVDAGKSTLLGVLTH LD+GRG AR +LFRHKH ESGRT SVGNDILGFD G
Sbjct: 144 AVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSVGNDILGFDVHG 202
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 112 bits (270), Expect = 2e-25
Identities = 70/185 (37%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Frame = +2
Query: 215 TEDEAFVESETDYSSIXGKMVMVSPNADXXXXXXXXXXXXXXXGNGEIIYDIGHGEDG-- 388
++ E + ET+ +I K +V+P G GE IY+IG + G
Sbjct: 48 SDTENRLPPETELGNIEYKAKLVNPTTSRIQHLITQMKWRLREGQGEAIYEIGVEDGGIM 107
Query: 389 RGLTEDEYNASLATLHSLVASERVSCVELRRWEC---GSG---LTGQYLLRTELDNNDFM 550
GLT++E N SL TL ++ + S V L + GS + L+R ++ F+
Sbjct: 108 SGLTDEELNDSLRTLRTMAQALGASMVILTEKDVTVKGSNSRRTVVEVLVRKVPESQQFI 167
Query: 551 EIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQRLFRHKHXMESGRTXSVGNDILGFD 730
E+R+AVVG D GKSTL GVLT G LD+G G AR +FR H + +G+T SV ND++GFD
Sbjct: 168 EVRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIFRFPHEVRTGKTSSVCNDVIGFD 227
Query: 731 NMGML 745
N G L
Sbjct: 228 NRGKL 232
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTH 619
I + VVG+VDAGKSTL+G L H
Sbjct: 171 INLIVVGHVDAGKSTLMGHLLH 192
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 554 IRVAVVGNVDAGKSTLLGVLTH 619
I + VVG+VDAGKSTL+G L H
Sbjct: 189 INLIVVGHVDAGKSTLMGHLLH 210
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +2
Query: 506 GQYLLRTELDNNDFMEIRVAVVGNVDAGKSTLLGVLTHGELDNGRGYARQ 655
G+ +L +L+ M+ R+A+VG GKSTLL +L G++D G R+
Sbjct: 415 GKDVLFKKLNFGVDMDSRIAIVGPNGVGKSTLLKLLI-GKIDPNDGELRK 463
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 500 AHFHTPTSSAQHMTL--SHLPPMNEALLGTHCIHPL 399
AH T+SA + S LPP +E +GTHC+ L
Sbjct: 320 AHLSATTASATPIMANGSTLPPSSETTVGTHCLQQL 355
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 500 AHFHTPTSSAQHMTL--SHLPPMNEALLGTHCIHPL 399
AH T+SA + S LPP +E +GTHC+ L
Sbjct: 88 AHLSATTASATPIMANGSTLPPSSETTVGTHCLQQL 123
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 500 AHFHTPTSSAQHMTL--SHLPPMNEALLGTHCIHPL 399
AH T+SA + S LPP +E +GTHC+ L
Sbjct: 320 AHLSATTASATPIMANGSTLPPSSETTVGTHCLQQL 355
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
W05B2.4 protein.
Length = 2265
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 218 EDEAFVESETDYSSIXGKMVMVSPNAD 298
EDE F +S D S G +++V+PN D
Sbjct: 1617 EDEPFCQSSIDKDSAIGNIMIVTPNMD 1643
>U88314-1|AAF99885.1| 342|Caenorhabditis elegans Hypothetical
protein C46H11.6 protein.
Length = 342
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -2
Query: 673 FVAEQPLSCIPSTVVQF---SVREDPEQRGLASVHVTHHSHSNLHKVIIVKLRPKEVLA 506
F+ E+P+S + ++ SV DP+ + + SN+H ++ KL+PK +L+
Sbjct: 210 FLVERPVSVESANTLRHLIESVAPDPDVKMANDAICIGRNASNMHYNVLKKLQPKSILS 268
>AC006762-5|AAF60553.2| 684|Caenorhabditis elegans Hypothetical
protein Y42G9A.6a protein.
Length = 684
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 563 AVVGNVDAGKSTLLGVLTHGELDN 634
A++G AGK+TLL VLT L N
Sbjct: 96 AIIGPSGAGKTTLLNVLTKRNLSN 119
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
+ I + V+G+VD+GKST G L +
Sbjct: 6 VHINIVVIGHVDSGKSTTTGHLIY 29
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
+ I + V+G+VD+GKST G L +
Sbjct: 6 VHINIVVIGHVDSGKSTTTGHLIY 29
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
+ I + V+G+VD+GKST G L +
Sbjct: 6 VHINIVVIGHVDSGKSTTTGHLIY 29
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
+ I + V+G+VD+GKST G L +
Sbjct: 6 VHINIVVIGHVDSGKSTTTGHLIY 29
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
+ I + V+G+VD+GKST G L +
Sbjct: 6 VHINIVVIGHVDSGKSTTTGHLIY 29
>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
F42C5.10 protein.
Length = 1292
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -2
Query: 643 PSTVVQFSVREDPEQRGLASVHVTHHSHSNLH 548
P V + + D E +VHV HH H + H
Sbjct: 923 PHGQVVYDIPHDQEHHHYDTVHVQHHHHHHYH 954
>U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical
protein C05D10.3 protein.
Length = 598
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 560 VAVVGNVDAGKSTLLGVLTHGELDN 634
+A++G+ AGK+TL+ VLT L N
Sbjct: 23 LAILGSSGAGKTTLMNVLTSRNLTN 47
>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
protein C36B7.5b protein.
Length = 1148
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 558 EWLWWVTWTLASPRCSGSS-RTENWTTVEGMHDRGC 662
EW W WT+ RC S R N + ++ C
Sbjct: 495 EWSQWTAWTVCDERCGEESIRLRNRKCMNAENNNAC 530
>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
protein C36B7.5a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 558 EWLWWVTWTLASPRCSGSS-RTENWTTVEGMHDRGC 662
EW W WT+ RC S R N + ++ C
Sbjct: 495 EWSQWTAWTVCDERCGEESIRLRNRKCMNAENNNAC 530
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,644,621
Number of Sequences: 27780
Number of extensions: 346744
Number of successful extensions: 895
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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