Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P11
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    28   0.11 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    28   0.11 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   1.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
           + I + V+G+VD+GKST  G L +
Sbjct: 6   IHINIVVIGHVDSGKSTTTGHLIY 29


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 548 MEIRVAVVGNVDAGKSTLLGVLTH 619
           + I + V+G+VD+GKST  G L +
Sbjct: 6   IHINIVVIGHVDSGKSTTTGHLIY 29


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 560 VAVVGNVDAGKSTLLGVL 613
           V ++G+VD GK+TLL  L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 500 LTGQYLLRTELDN-NDFMEIRVAVVGNVDAGKSTLL 604
           L   Y ++  LD+ N  MEI   +  N+D  K+T++
Sbjct: 394 LNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTII 429


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 674 VCGGTASVVHTLDRCP 627
           +CG    + HT+  CP
Sbjct: 77  ICGACGDIAHTVKYCP 92


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 505 GEPTSTLPPPQLNT*HSL 452
           G P +T  PPQL T  S+
Sbjct: 446 GSPATTAAPPQLPTEESV 463


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 494 FHTPTSSAQHMTLSHLP 444
           +HTP     H  L H+P
Sbjct: 329 YHTPEPDCIHELLGHMP 345


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 206 ISLTEDEAFVESETDYSSIXGKMVMVSP 289
           I L E+E   E+E+DY      +V  SP
Sbjct: 339 IPLEEEEWENENESDYQDAFCNIVSCSP 366


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 497 HFHTPTSSAQHMTLSHLPPMNEA 429
           H H  T S QH+     P ++E+
Sbjct: 353 HHHHQTQSLQHLHYRQPPTLSES 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,098
Number of Sequences: 438
Number of extensions: 4287
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)