Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P09
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    24   1.2  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   1.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.6  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   3.7  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      22   6.5  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 276 VDRQPPLRSPFSWTWK 229
           V R PP RSP+ W  K
Sbjct: 114 VARPPPARSPYEWIKK 129


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 276 VDRQPPLRSPFSWTWK 229
           V R PP RSP+ W  K
Sbjct: 114 VARPPPARSPYEWIKK 129


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = +1

Query: 553 IDLQISHLLVLFNKIYIFFKFRFSFVLYNIMLSNFFT 663
           ++++  + ++ F +I ++     + +LYN+M S F T
Sbjct: 324 LEIEKYYNILYFCRIMVYLNSAINPILYNLMSSKFRT 360


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -3

Query: 459 SWSTTALPMMPCGPDSEIWSSTKS 388
           +WST   P     P    WS T S
Sbjct: 306 TWSTVQTPTTVMSPTINCWSLTSS 329


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 659 KKLLNIILYNTNEKRNLKNIYILLNKT 579
           KK+ N      N + NL N Y++   T
Sbjct: 349 KKIRNFYYGGPNSENNLDNFYLIHTDT 375


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,430
Number of Sequences: 336
Number of extensions: 3890
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)