Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P09
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   129   5e-31
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.14 
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    28   1.3  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    28   1.8  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    28   1.8  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   7.1  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   7.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  129 bits (311), Expect = 5e-31
 Identities = 70/149 (46%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
 Frame = +2

Query: 110 RAIAVLSTET-IRGNITFTQV-QDGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCLSTG 280
           RA+AVL  ++ + G +TF QV Q+ +V V   + G     + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 281 SHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHE 460
            HFNPE K HG      RHVGDLGN+  D     +    D  ISL G + IIGR +V+H 
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHA 122

Query: 461 KADDYGKSDHPDSRKTGNAGGRVACGVIG 547
             DD GK    +S KTGNAG R ACGVIG
Sbjct: 123 GEDDLGKGTSEESLKTGNAGARNACGVIG 151


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +2

Query: 320  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 439
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 607 FKFRFSFVLYNIMLSNFFTDSAG 675
           F+F FSF+LYN+++S      AG
Sbjct: 849 FRFSFSFILYNLLISTSTVFFAG 871


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 695 YSLFDWLPAESVKKLLNIILYNTNEKRNLK 606
           + LF   PAE +++LL   L+N  E++NL+
Sbjct: 150 FDLFTAQPAEKIQQLLKAELHNILEEKNLQ 179


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +2

Query: 14  EANEQNKNASFNSHSWAAIALATAHHGFTTPSRAI 118
           E  E  K ++F SHS     L+TAHH    PS+ I
Sbjct: 304 EEYEGKKLSNFLSHSKEPPLLSTAHHSAYRPSKNI 338


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 89  HGFTTPSRAIAVLST 133
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 335 HVGDLGNVVFDENHYSRIDLVDDQI 409
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 549 IPMTPQATRPPALPVFLESG 490
           +P  P   +PPA+PV  E+G
Sbjct: 673 VPEVPSVPQPPAVPVVPEAG 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,414
Number of Sequences: 5004
Number of extensions: 62588
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)