Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P09
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 176 1e-44
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 176 2e-44
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 165 5e-41
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 131 7e-31
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 52 5e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.085
06_03_0288 - 19179619-19179714,19180209-19180300,19180408-191804... 30 2.4
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 29 5.6
03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600 29 5.6
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 28 7.4
09_06_0081 + 20745627-20748144,20748211-20748308 28 7.4
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 28 9.8
09_04_0188 - 15410310-15410514,15410597-15410748,15410845-154110... 28 9.8
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 28 9.8
03_01_0515 - 3864796-3865425 28 9.8
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 28 9.8
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 176 bits (429), Expect = 1e-44
Identities = 80/147 (54%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Frame = +2
Query: 110 RAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 286
+A+AVL S+E ++G I F+Q DG V G ++GL PG +GFHVH GD + GC+STG H
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPH 62
Query: 287 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 466
FNP K+HG P D NRH GDLGN+ + + +++ D QI L+G H IIGRAVV+H
Sbjct: 63 FNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADP 122
Query: 467 DDYGKSDHPDSRKTGNAGGRVACGVIG 547
DD GK H S+ TGNAGGRVACG+IG
Sbjct: 123 DDLGKGGHELSKTTGNAGGRVACGIIG 149
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 176 bits (428), Expect = 2e-44
Identities = 81/150 (54%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Frame = +2
Query: 101 TPSRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLST 277
T +A+ VL S+E ++G I F Q DG V G ++GL PG +GFH+H GD + GC+ST
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMST 177
Query: 278 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLH 457
G H+NP K+HG P D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H
Sbjct: 178 GPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 237
Query: 458 EKADDYGKSDHPDSRKTGNAGGRVACGVIG 547
DD GK H S+ TGNAGGRVACG+IG
Sbjct: 238 ADPDDLGKGGHELSKTTGNAGGRVACGIIG 267
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 165 bits (400), Expect = 5e-41
Identities = 76/147 (51%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Frame = +2
Query: 110 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 286
+A+AVL T + G +T TQ G V +TGL PG +GFH+HE GD + GC+STG H
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPH 112
Query: 287 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 466
FNP + HG P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE
Sbjct: 113 FNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELE 172
Query: 467 DDYGKSDHPDSRKTGNAGGRVACGVIG 547
DD GK H S TGNAGGR+ACGV+G
Sbjct: 173 DDLGKGGHELSLSTGNAGGRLACGVVG 199
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 131 bits (316), Expect = 7e-31
Identities = 58/108 (53%), Positives = 75/108 (69%)
Frame = +2
Query: 158 FTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRH 337
F G V+G +TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RH
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERH 89
Query: 338 VGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGK 481
VGDLGN+V +++ + I + D QISLSGPH I+GRAVV+H +DD G+
Sbjct: 90 VGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 52.0 bits (119), Expect = 5e-07
Identities = 35/121 (28%), Positives = 60/121 (49%)
Frame = +2
Query: 107 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 286
S A+A I G + QV V+ +GL PG++G+ ++E GDL+ G STG
Sbjct: 165 SAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKV 224
Query: 287 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 466
+NP D+ N+ +GDLG + E ++ +++ + +IGR++ L+
Sbjct: 225 YNP--SDYRS----NKPLGDLGTLEAGEKGEAQFSASKEKLKVV---DLIGRSIALYATE 275
Query: 467 D 469
D
Sbjct: 276 D 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.085
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 182 VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 280
+ V+ ++GL P +GFHVH G + GC+ G
Sbjct: 37 ITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>06_03_0288 -
19179619-19179714,19180209-19180300,19180408-19180494,
19180802-19180963,19181032-19181183,19181526-19181872
Length = 311
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 521 RQRCRSSWSPDGHSCRNHQLSHGAP 447
RQ RS + DG CR H L HG P
Sbjct: 101 RQPPRSRFDGDGVGCRLHTLGHGGP 125
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 540 TPQATRPPALPVFLESGWSLLP*SSAFSWSTTALP 436
T A +P A+P + W+ P +A W T A P
Sbjct: 249 TDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAP 283
>03_02_0561 + 9466428-9466502,9466503-9467243,9467592-9467600
Length = 274
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = +1
Query: 337 RRRPWKRGL*R-----EPLQQDRLGRRPDLAIGSARHHRQSGG 450
RRRPW RG R P + GRRP G H +SGG
Sbjct: 47 RRRPWSRGGGRAAPESTPPAKYARGRRPRRGSGGHAPHPESGG 89
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 488 GHSCRNHQLSHGAPPLCR*CRADPI 414
G + +H+ GAPPL R C A P+
Sbjct: 109 GENLNHHRSPAGAPPLTRLCAAGPV 133
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 537 PQATRPPALPVFLESGWSLLP*SSAFSWSTTALPMMPCGP 418
P+A+ PA PV GW++ P ++ +S+S + P
Sbjct: 591 PRASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAP 630
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 307 PRSSERCQPSRRRPWKRGL*REPLQQDRLGRRPD 408
PR S R + RRPW RG R L+ G RPD
Sbjct: 90 PRISGRQRGGGRRPWDRGRRRRRLEH---GGRPD 120
>09_04_0188 -
15410310-15410514,15410597-15410748,15410845-15411003,
15411062-15411367,15412508-15412535,15413174-15413290,
15413649-15413717,15413919-15414103
Length = 406
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 278 QSIDNRRSGRPSHGRGNRIHPEAAQ*CLPEREPSHLEP 165
+ I + R R SHG G P+AAQ L +R P P
Sbjct: 147 EDIRHHRLRRRSHGHGVLQGPQAAQLLLSDRRPELSSP 184
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 533 KRLD-RQRCRSSWSPDGH-SCRNHQLSHGAP 447
KR+D RQRC+ S+SP SC + +L AP
Sbjct: 453 KRMDDRQRCQCSFSPVARPSCGHDELQAAAP 483
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 264 PPLRSPFSWTWKPYSPGGSPVMPP 193
PPL P S T P P P+MPP
Sbjct: 49 PPLAPPPSVTSSPPPPAAGPLMPP 72
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 12 RKPTSKTKMLASTHIPGLRSLWRRLIMASPRRPALLPFYPQKRLEATSHLLR 167
R P + + L P LR RL++A PAL +PQ+ ++ +HL R
Sbjct: 401 RPPAAAGESLVLWAAPRLRD--SRLVVAELPDPALQGRFPQEEMQIMAHLAR 450
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,105,889
Number of Sequences: 37544
Number of extensions: 472045
Number of successful extensions: 1418
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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