Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P09
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               149   2e-36
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                66   4e-11
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                51   9e-07
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         38   0.012
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     31   0.81 
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      31   1.1  
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               30   1.9  
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)          30   1.9  
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)                  29   5.7  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)                    28   10.0 
SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)                    28   10.0 

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  149 bits (362), Expect = 2e-36
 Identities = 64/120 (53%), Positives = 85/120 (70%)
 Frame = +2

Query: 188 VQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFD 367
           + G I GL  G +GFH+H  GD + GC+S G HFNP  K+HG P+D NRHVGDLGNVV  
Sbjct: 30  ITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGNVVAG 89

Query: 368 ENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGNAGGRVACGVIG 547
           ++  + ID+ D  ++L G H ++GR+VV+H   DD G+  H DS+ TG+AGGR+ACGVIG
Sbjct: 90  DDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIG 149


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 30/70 (42%), Positives = 43/70 (61%)
 Frame = +2

Query: 335 HVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGN 514
           HVGDLGN++ ++N  +     D  + +     IIGRA+V+H   DD G+  H  S+ TGN
Sbjct: 1   HVGDLGNIIANQNGRATFRFEDKTVKV---WDIIGRAIVVHADEDDLGRGGHELSKSTGN 57

Query: 515 AGGRVACGVI 544
           +G RV CG+I
Sbjct: 58  SGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +2

Query: 308 HGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVV 451
           HG P D +RH+GDLGN+  D N  + + + D  +SL+G   IIGR++V
Sbjct: 2   HGAPEDKDRHLGDLGNIEADANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
 Frame = +2

Query: 119 AVLSTETIRGNITFTQVQ-DGKVHVQGGITGLPPGEYGFHVHE-----KGDLSGGC--LS 274
           A  S   IRG +TFTQ   +   +++  +TG+      + +H+     KG+ +  C  ++
Sbjct: 59  ATFSMSGIRGTVTFTQSSPNTSTNIKLALTGVNE-TLSWQIHDLPVIYKGNAATTCNTVA 117

Query: 275 TGSHFNPEHKDHGHPNDVNRH---VGDL-GNVVF-DENHYSRIDLVDDQISLSGPHGIIG 439
            G+ ++P+       +   +    VGDL G   F D N+ S +   D  + L+G HGI G
Sbjct: 118 LGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIFG 176

Query: 440 RAVVL 454
           R +VL
Sbjct: 177 RTLVL 181


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = -1

Query: 521 RQRCRSSWSPDGHSCRNHQLSHGAPPLCR*CRADPIARSGRLPSRS 384
           RQRCRS   P       H LS   PP+ R   A P+    R   RS
Sbjct: 502 RQRCRSEGLPTSERAPRHYLSKRQPPVWRLDLAQPVGPPPRDSVRS 547


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
 Frame = +2

Query: 242 EKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDE---NHYSRIDLVD-DQI 409
           ++ DL     S   H N   +D GH ++    + D  N   DE   +H S  D++D + +
Sbjct: 204 QRSDLIHSSQSEAVHRNVHAEDEGHIDEYGCGLHD--NEQLDEEVASHVSGDDIMDVNDL 261

Query: 410 SLSGPHGIIGRAVVLHEKA--DDYGKSDHPDSRKTGNAGGRVA 532
             S     + R V   +K   D+YG   H D +  G A   V+
Sbjct: 262 IHSSQSEAVHRNVHAEDKGHIDEYGCGLHNDEQSDGEAASHVS 304


>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 348

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 206 GLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDV 328
           GLPPG  G +V  +     G L  G+H + +H     PN+V
Sbjct: 307 GLPPGNPGQYVTPQ-PRHAGLLENGNHVSEQHNKQTPPNNV 346


>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
          Length = 1003

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +2

Query: 131 TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 286
           +E +  N T     DG+V V+  +TG   G     + E+ DL+ G ++  SH
Sbjct: 395 SEILHFNYTIYMSPDGRVGVENPVTGNWDGVINELIQERADLAVGPITITSH 446


>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 371 NHYSRIDLVDDQISLSGPHGIIG-RAVVLHEKADDYGKSDHP 493
           NH+S   L   + +L GP+   G R +++++K D Y K D P
Sbjct: 111 NHHSTGILKCQRANLKGPNLCAGKRRILIYDKYDKYDKYDFP 152


>SB_2229| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-25)
          Length = 419

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 233 HVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRID 391
           +V    DL  G L  G+H       HG+ ND+N  V    N  + E++  + D
Sbjct: 348 NVPSVADLPNGQLHHGNHNINGPLFHGNNNDLNGQVSQRNNYNYSEDYLHQCD 400


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 307 PRSSERCQPSRRRPWKRG-L*REPLQQDRLG-RRPDLAIGSARHHRQSGGAP 456
           PRS ER      RP +RG   R P +++R G RRP  A   +R   +  G P
Sbjct: 621 PRSRERSDRRDERPQRRGSRGRSPGRREREGERRPRSAERQSRRQDEPKGEP 672


>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 278 GSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQIS 412
           G+H N  H    HP++V+     L  V   +N  S +   D+Q S
Sbjct: 617 GNHLNTVHTPDNHPSNVHTPDNHLNTVHTPDNQPSTVHTPDNQPS 661


>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/87 (25%), Positives = 32/87 (36%)
 Frame = +2

Query: 80  TAHHGFTTPSRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 259
           T HH     +  +   +T  + GN T     +   HV G  T   PG    HV   G+ +
Sbjct: 372 TTHHVPGNTTHHVPGNTTHHVPGNTTHHVPGNTTHHVSGYTTHHVPGNTTHHV--PGNTT 429

Query: 260 GGCLSTGSHFNPEHKDHGHPNDVNRHV 340
                  +H  P +  H  P +   HV
Sbjct: 430 HHVPGNTTHHVPGNTTHHVPGNTTHHV 456


>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
          Length = 734

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +3

Query: 120 PFYPQKR--LEATSHLLRFKMGRFTFREASLGCLRVNTVSTSMRRAT*AAVVYRLDHISI 293
           P  PQ R     T    R+K  +   + +  GC R   VS+ ++ +    VVYRL     
Sbjct: 538 PARPQYRDAFVVTRSTYRYKQCKGKAKRSHCGCTRATKVSSLVQHSDCIEVVYRLLFDEK 597

Query: 294 LNIRTTVIR 320
           L  R  V+R
Sbjct: 598 LTPRFLVLR 606


>SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)
          Length = 258

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 161 TQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLS 274
           T V +G +HVQ  +T +P G       E  D+  GC++
Sbjct: 58  TDVPEGSIHVQEEMTDVPKGSINVQ-EEITDVPEGCIN 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,835,695
Number of Sequences: 59808
Number of extensions: 510935
Number of successful extensions: 1372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)