Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P09
(791 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 148 4e-36
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 148 4e-36
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 148 4e-36
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 145 3e-35
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 145 3e-35
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 145 3e-35
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 145 3e-35
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 131 6e-31
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z93383-10|CAB07632.1| 286|Caenorhabditis elegans Hypothetical p... 28 6.7
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 148 bits (359), Expect = 4e-36
Identities = 69/141 (48%), Positives = 90/141 (63%)
Frame = +2
Query: 125 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHK 304
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 305 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 484
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153
Query: 485 DHPDSRKTGNAGGRVACGVIG 547
S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 148 bits (359), Expect = 4e-36
Identities = 69/141 (48%), Positives = 90/141 (63%)
Frame = +2
Query: 125 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHK 304
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 305 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 484
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153
Query: 485 DHPDSRKTGNAGGRVACGVIG 547
S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 148 bits (359), Expect = 4e-36
Identities = 69/141 (48%), Positives = 90/141 (63%)
Frame = +2
Query: 125 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHK 304
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G H+NP
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKL 93
Query: 305 DHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKS 484
HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK DD G+
Sbjct: 94 SHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153
Query: 485 DHPDSRKTGNAGGRVACGVIG 547
S+ TGNAG R+ACG IG
Sbjct: 154 TSDQSKTTGNAGSRLACGTIG 174
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 145 bits (352), Expect = 3e-35
Identities = 71/150 (47%), Positives = 96/150 (64%), Gaps = 4/150 (2%)
Frame = +2
Query: 107 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 283
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62
Query: 284 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 463
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 464 ADDYGK---SDHPDSRKTGNAGGRVACGVI 544
DD G+ +S+KTGNAG R ACGVI
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVI 152
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 145 bits (352), Expect = 3e-35
Identities = 71/150 (47%), Positives = 96/150 (64%), Gaps = 4/150 (2%)
Frame = +2
Query: 107 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 283
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62
Query: 284 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 463
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 464 ADDYGK---SDHPDSRKTGNAGGRVACGVI 544
DD G+ +S+KTGNAG R ACGVI
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVI 152
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 145 bits (352), Expect = 3e-35
Identities = 71/150 (47%), Positives = 96/150 (64%), Gaps = 4/150 (2%)
Frame = +2
Query: 107 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 283
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 62
Query: 284 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 463
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 464 ADDYGK---SDHPDSRKTGNAGGRVACGVI 544
DD G+ +S+KTGNAG R ACGVI
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAACGVI 152
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 145 bits (352), Expect = 3e-35
Identities = 71/150 (47%), Positives = 96/150 (64%), Gaps = 4/150 (2%)
Frame = +2
Query: 107 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGS 283
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 25 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGP 84
Query: 284 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 463
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 85 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 144
Query: 464 ADDYGK---SDHPDSRKTGNAGGRVACGVI 544
DD G+ +S+KTGNAG R ACGVI
Sbjct: 145 QDDLGEGVGDKAEESKKTGNAGARAACGVI 174
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 131 bits (316), Expect = 6e-31
Identities = 67/149 (44%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Frame = +2
Query: 110 RAIAVLSTETIRGNITFTQVQDGK-VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGSH 286
RA+AVL + G + TQ +G+ +G I GL PG +GFH+H+ GD + GC S G H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 287 FNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKA 466
FNP +HG + V RHVGDLGNV + ++I D +SL G + +IGR++V+H
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDR 143
Query: 467 DDYGK---SDHPDSRKTGNAGGRVACGVI 544
DD G+ +S KTGNAG R ACGVI
Sbjct: 144 DDLGQGIDDKAEESLKTGNAGARAACGVI 172
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 59 WAAIALATAHHGFTTPSRAIAVLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGF 232
+A I T H F + A+A+L T G TF+Q+ + + G + LP G +
Sbjct: 866 FATIREITPHDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAV 925
Query: 233 HVHEKGDLSGGCLSTGSHFN 292
+H+ GD S GC G+ F+
Sbjct: 926 VLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +2
Query: 59 WAAIALATAHHGFTTPSRAIAVLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGF 232
+A I T H F + A+A+L T G TF+Q+ + + G + LP G +
Sbjct: 657 FATIREITPHDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAV 716
Query: 233 HVHEKGDLSGGCLSTGSHFN 292
+H+ GD S GC G+ F+
Sbjct: 717 VLHQFGDSSEGCSRVGAPFS 736
>Z93383-10|CAB07632.1| 286|Caenorhabditis elegans Hypothetical
protein F54B8.11 protein.
Length = 286
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 517 WRSSRLR-CHRNSIDLQISHLLVLFNKIYIFFKFRFS 624
W++S+ R C I L S +L+LFN I IFF FS
Sbjct: 197 WKNSKQRFCKVTQIALLDSLILLLFNIIPIFFYSYFS 233
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,831
Number of Sequences: 27780
Number of extensions: 373708
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -