Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P08
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   4.5  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    25   7.9  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.9  

>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 484 KYQCRRDTNKRKYCLI 437
           K+  R+DTN RK+CL+
Sbjct: 38  KFPARKDTNPRKFCLL 53


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 421 HIAFSKCNSQNISRERSNKRSKMSLVLEK 335
           HIAF+  N   I RER+ K  K S   +K
Sbjct: 347 HIAFTGLNKPTIERERNLKLRKKSRFYKK 375


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 333 YFSKTSDIFDRLFDLSRLMFCELHLLKAMCLTNDVIKQYFLLFVSRL 473
           YF+KT     RLF    L+ C  + LK   LT        ++FV+ +
Sbjct: 39  YFTKTH--LHRLFVFVVLLLCSGYFLKHTLLTRPKESNVVMIFVNNI 83


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 522 LYT*STFIVNSIKNTSADEIQIRENIV*LHRWLNTSLSV 406
           LY     IV S K  + +EI    N+  LHRWL+ SL V
Sbjct: 600 LYLFQPKIVCSEKYINHEEID-NMNLKSLHRWLSRSLHV 637


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,197
Number of Sequences: 5004
Number of extensions: 43230
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)