Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P08
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0335 + 2412766-2415655,2416108-2416208,2416871-2416895,241...    29   2.0  
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100...    29   2.6  
11_06_0070 + 19802893-19803026,19803054-19803816                       27   8.0  
11_06_0039 - 19512126-19512211,19514959-19516036                       27   8.0  

>06_01_0335 +
           2412766-2415655,2416108-2416208,2416871-2416895,
           2416977-2417049,2417191-2417373,2418164-2418227,
           2418427-2418447,2418862-2418905,2420575-2420650,
           2421359-2421373
          Length = 1163

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 487 KKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRS 359
           +K+ CR D   ++ CL+   + H+AF   NS  I+ + +  RS
Sbjct: 475 EKFVCRIDD--KETCLMEENIHHVAFYNSNSSEIAMDLNQVRS 515


>06_03_1076 +
           27409107-27409204,27409731-27409835,27409915-27410032,
           27410180-27410230,27410328-27410419,27410558-27410657,
           27411018-27411137,27411227-27411295,27411468-27411514,
           27411597-27411652,27412293-27412333,27412570-27412675,
           27413891-27414023,27414096-27414645
          Length = 561

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 514 LKYIYSKFNKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRS 359
           L Y + +F  K  C R   K   CLI     H+ FS+  S+   + R +KR+
Sbjct: 280 LCYAFIEFETKEACERAFFKMDNCLIDDRRIHVDFSQSVSKLWGQFRQSKRN 331


>11_06_0070 + 19802893-19803026,19803054-19803816
          Length = 298

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = -1

Query: 303 TLVTKNVTSINFCSTE*SVVVTGSYWSPLVTTRRQGRRA 187
           T V +  TSI   +T  S   TG YW+P   TRR  RRA
Sbjct: 89  TSVEETATSIGVPATYRSRPKTGRYWTP---TRRPLRRA 124


>11_06_0039 - 19512126-19512211,19514959-19516036
          Length = 387

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 495 NSIKNTSADEIQIRENIV*LHRWLNTSLSVNAIHK 391
           N+I NT+AD+         +H  L+ + +VN+IH+
Sbjct: 295 NNISNTNADDTTNNHGSCPIHDHLDQACNVNSIHQ 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,088,227
Number of Sequences: 37544
Number of extensions: 240155
Number of successful extensions: 536
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)