Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P08
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38519| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_35006| Best HMM Match : PT (HMM E-Value=3.4)                        29   3.6  
SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 29   3.6  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   4.7  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 27   8.2  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_38519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 487 KKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRE-RSNKRSKMSLVLE 338
           +K QC+R+T+KR   L  S    + F    S  I RE RS  R KM    E
Sbjct: 58  RKLQCQRNTSKRLAALSLSRCHWLCFLTWQSLLIHREKRSFSRMKMQTARE 108


>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
          Length = 325

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 129 SILIIDTSNIVL*SVPIRLHTRPLPYFQT*FRYQRTFQYIG 7
           ++L++ +S + L +VPI  HT  L    T  + QRT+Q  G
Sbjct: 282 NLLLLSSSPMFLSAVPIAPHTPTLQGLHTTIQAQRTYQESG 322


>SB_6950| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 625

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 529 FKIIHLKYIYSKFNKKYQCRRDTNKRKYCL 440
           ++  H KYIY+    KY   R  NK K+C+
Sbjct: 135 YRCAHNKYIYNPKTHKYCYGRIINKEKHCV 164



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 529 FKIIHLKYIYSKFNKKYQCRRDTNKRKYCL 440
           ++  H KYIY+    KY   R  NK K+C+
Sbjct: 311 YRCAHNKYIYNPKTHKYCYGRIINKEKHCV 340


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 529 FKIIHLKYIYSKFNKKYQCRRDTNKRKYCL 440
           ++  H KYIY+   +KY   R   KRK+C+
Sbjct: 480 YRCAHNKYIYNPKTQKYCYGRIIPKRKHCV 509


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 205 APGPPRAGDDSTDLSYALEINVYMFIN 125
           APG  R G DS  LSY L I   +F N
Sbjct: 578 APGESRQGQDSQTLSYKLFIPASVFYN 604


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 544 HFQ*LFKIIHLKYIYSKFNKKYQCRRDTNKRK 449
           HF  L KI++  Y+Y+K  K  + R+D ++ K
Sbjct: 130 HFPELVKIVNDNYMYAKVAKYIKSRKDLSEDK 161


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 529  FKIIHLKYIYSKFNKKYQCRRDTNKRKYCL 440
            ++  H KYIY+    KY   R   KRK+C+
Sbjct: 954  YRCAHNKYIYNPKTHKYCYGRIIPKRKHCV 983


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,032,508
Number of Sequences: 59808
Number of extensions: 312409
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)