Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P08
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    28   4.1  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    28   4.1  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    28   4.1  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    28   4.1  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    28   4.1  
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    27   9.5  

>Z81066-2|CAB02971.1|  239|Caenorhabditis elegans Hypothetical
           protein F17B5.3 protein.
          Length = 239

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 469 RDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNKRSKMS 350
           R+ N RK   +  ++KH+  S   S + S ERS +R K S
Sbjct: 21  RNENPRK---VIKIIKHVGSSSSYSSSSSEERSKRRHKNS 57


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 490 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 365
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 42  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 83


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 490 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 365
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 42  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 83


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 490 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 365
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 41  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 82


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 490 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 365
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 40  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 81


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 490 NKKYQCRRDTNKRKYCLITSLVKHIAFSKCNSQNISRERSNK 365
           NK Y+CR D N      I  + +   F+KC +  + RE   K
Sbjct: 36  NKLYRCRGDGNCDILSTIRCMCRACRFAKCMAVGMKREAVQK 77


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 442 NNIFSYLYLVCTGIFY 489
           NNI+ +LY+ CTGI +
Sbjct: 95  NNIYYFLYIRCTGIIF 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,893
Number of Sequences: 27780
Number of extensions: 241450
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)