Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_P06
(752 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16789| Best HMM Match : No HMM Matches (HMM E-Value=.) 296 1e-80
SB_8941| Best HMM Match : VWA (HMM E-Value=0) 30 2.3
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22) 30 2.3
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 29 3.1
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 29 4.1
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.1
SB_10746| Best HMM Match : Cadherin (HMM E-Value=0) 28 7.1
SB_56765| Best HMM Match : IWS1_C (HMM E-Value=3.9) 28 9.4
SB_44299| Best HMM Match : IWS1_C (HMM E-Value=3.9) 28 9.4
SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1) 28 9.4
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 28 9.4
SB_42282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_11091| Best HMM Match : Astacin (HMM E-Value=1.3e-38) 28 9.4
>SB_16789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 296 bits (726), Expect = 1e-80
Identities = 142/212 (66%), Positives = 178/212 (83%), Gaps = 1/212 (0%)
Frame = +3
Query: 117 DVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNV 296
D N MTLTR+VL++QR P ATGDLTQLL++I TAVKA SAVRKAGIA+L GI+GDTN+
Sbjct: 3 DTNCMTLTRFVLSEQRKIPGATGDLTQLLSAIMTAVKATSSAVRKAGIARLFGIAGDTNI 62
Query: 297 QGEEVKKLDVLSNDLFINMLKSSFTTCLLVSEENQTVLQVETERRGKYVVCFDPLDGSSN 476
G++ +KLDVL+N+LFINML+SS+TTCLLVSEEN+TV++VE E++GKYVV FDPLDGSSN
Sbjct: 63 SGDQQQKLDVLANELFINMLRSSYTTCLLVSEENETVIEVEIEKQGKYVVWFDPLDGSSN 122
Query: 477 IECLVSVGSIFAIYKKKSEGDPVESDALKPGRELVAAGYALYGSATMMVLSLGKGKGVNG 656
I+CL S+GSIF I +K S+ P + D ++PGR +VAAGYALYGSAT++VLS G GVN
Sbjct: 123 IDCLASIGSIFGIARKISDDSPGQQDGIQPGRNMVAAGYALYGSATVIVLS--TGNGVNE 180
Query: 657 FMYDPSIGEFILTDPNMKIPXKGK-IYSINEG 749
F DPSIGEF+LT PN+++ +GK IYS+NEG
Sbjct: 181 FTLDPSIGEFVLTKPNIRMKPRGKAIYSVNEG 212
>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
Length = 2180
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 111 AFDVNAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLH 272
A D+ + LTR +R P A + +IQTAVKA++S+VR A +H
Sbjct: 1859 ALDMGNLPLTR---RTRRLIPKAIICIMDASKAIQTAVKALRSSVRPLHDAGVH 1909
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 113 FRCQRYDVDTVGSRAAEDGAYCHRGPDSAPKLYTDRCEGYTIRCEES 253
+RCQR+ D+ R A AY G S LYT R ++C+ +
Sbjct: 572 YRCQRWQRDSNDRRRANRAAY---GNQSHCTLYTQRENSQALKCDSA 615
>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
Length = 407
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -1
Query: 713 YFHVRVGKNELSYRRVVHEAVHALALSQRQDHHGSRTIQGI 591
Y +V++ +R VH+ + A+ +Q Q GS+TI+G+
Sbjct: 237 YTYVKIHSVVRKHRARVHDTIPAIPSNQSQGVQGSKTIRGL 277
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 265 NYMESPVTQTFKVKRSKNWTSFPTTSSSTCLNPHLPHVSLCPKKT 399
+Y+ES T + + +T P +SSS+ PHL H P T
Sbjct: 1043 SYLESRGKDTDRYSSNTMYTPTPESSSSSLYKPHLHHQDPMPTGT 1087
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 210 IQTAVKAIQSAVRKAGIAKLHGISGDTNVQGEEVKKLDVLSND 338
I T +K +S V + G+ +L I+GD + G+E + D+L+ D
Sbjct: 74 IDTFLKVDESIVSEEGLKELKEIAGDNDDSGDE-NEADLLTKD 115
>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1045
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +3
Query: 378 LLVSEENQTVLQVETERRGKYVVCFDPLDGSSNIECLVSVGSIFAIYKKKSEGDPVESDA 557
LLVS+ + T G Y VC + ++G + IEC S +I+ K E D
Sbjct: 596 LLVSQALSRMDYTATNTSGNYTVCENLMNG-AKIECARSANNIYNYCTSKFLPTGKEGDV 654
Query: 558 LKPGRELVA 584
+ EL++
Sbjct: 655 RQKCEELLS 663
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +3
Query: 102 QGPA---FDVNAMT---LTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAV 245
QGPA F++NA T T+ +L +++ P+A GD+ Q+ + T + + +
Sbjct: 58 QGPADGIFEINAATGVLRTKILLNREKLPPSAQGDIFQIQIKVTTDTGGVSATI 111
>SB_10746| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 336
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = +3
Query: 102 QGPA---FDVNAMT---LTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAV 245
QGPA F++NA T T+ +L +++ P+A GD+ Q+ + T + + +
Sbjct: 58 QGPADGIFEINAATGVLRTKILLNREKLPPSAQGDIFQIQIKVTTDTGGVSATI 111
>SB_56765| Best HMM Match : IWS1_C (HMM E-Value=3.9)
Length = 330
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 301 VKRSKNWTSFPTTSSSTCLNPHLPHV 378
++R++N T+F T+S TC+ L HV
Sbjct: 226 IRRARNATAFHTSSVITCVEDELCHV 251
>SB_44299| Best HMM Match : IWS1_C (HMM E-Value=3.9)
Length = 454
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 301 VKRSKNWTSFPTTSSSTCLNPHLPHV 378
++R++N T+F T+S TC+ L HV
Sbjct: 226 IRRARNATAFHTSSVITCVEDELCHV 251
>SB_40561| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
Length = 1139
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 451 KHTTYLPLRSVSTCKTVWFSSDTRRHVVNEDL-SMLMKRSLER 326
K TY C T+W SS+ RRH + D +LM + L R
Sbjct: 1092 KRPTYRYNSHPLVCCTLWKSSNKRRHAIVVDAEDILMTKRLSR 1134
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 189 LTQLLNSIQTAVKAIQS--AVRKAGIAKLHGISGDTNVQGEEVKKLDVLSNDLFINMLKS 362
++QL ++ +Q AV +A A + G+S + V +++ K+ S+DLF+ ++
Sbjct: 411 ISQLRQKCPDTLEMLQELKAVPQASDASIKGLSAEVEVMRKDLAKIKKHSSDLFLKHKRT 470
Query: 363 SFTTCLLVSEENQTVLQVE 419
+ + VL+ E
Sbjct: 471 DTQDVKFFRDVDLFVLEYE 489
>SB_42282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 572
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 123 NAMTLTRWVLAQQRTAPTATGDLTQLLNSIQTAVKAIQSAVRKAGIAKLHGISGDTNV 296
++ T+ W L + R A A G+L LNSI+ A A K + +G GD +V
Sbjct: 217 SSATVLAWGLVEYRDAYQAAGELDNALNSIKWATDYFIKAHTKK--FEFYGQVGDGHV 272
>SB_11091| Best HMM Match : Astacin (HMM E-Value=1.3e-38)
Length = 851
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 668 VVHEAVHALALSQRQDHHGSRTIQGI 591
++HE +HA+ + + D +GS+TI I
Sbjct: 120 ILHELLHAVGFADQFDKYGSQTIDDI 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,641,954
Number of Sequences: 59808
Number of extensions: 551778
Number of successful extensions: 1510
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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