Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P05
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    29   4.5  
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     29   4.5  
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067...    29   5.9  
12_02_0592 + 20868884-20868954,20869091-20869216,20869554-208698...    28   7.8  
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365...    28   7.8  
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472...    28   7.8  

>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 96  ASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPEA 272
           A G L +++S P SLS + S  +F SLL    S   G S+         L+T P + P +
Sbjct: 4   APGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSLPPS 51

Query: 273 VVEVYISGISSLG 311
               Y  G+SS G
Sbjct: 52  SPSSYFGGVSSSG 64


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 321 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 419
           DF    YP+   EY P  FDV  H   +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342


>11_04_0289 -
           15804766-15804977,15805742-15805862,15806541-15806776,
           15807639-15807766,15807873-15807910,15808041-15808129,
           15808669-15808774,15811395-15811580
          Length = 371

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 219 SLQRKGQEKQ--KIFLLKDSRKFYWNQRNLTTQDYGGCLVRQRH*YXXXXXXXKPIQIP 49
           S++R   EK   +   L  +RK  W+ R+L+T+       +QRH Y          Q+P
Sbjct: 128 SVRRNQAEKHCSRASSLVSNRKKIWDSRSLSTRGLAPVTAQQRHHYITSILARMDYQVP 186


>12_02_0592 +
           20868884-20868954,20869091-20869216,20869554-20869862,
           20870017-20870300,20870410-20871305,20871586-20871642,
           20872293-20872340,20873046-20873114
          Length = 619

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = +3

Query: 231 NGLLITDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRF 410
           N +L   PF TP+ +    ++ + + G SAD      PL  D+ +P  +    ++  QR 
Sbjct: 255 NFILGAMPFGTPQDLNYANVTSVRTTGFSAD------PLPTDQKQP-AWKPYLYKGRQRT 307

Query: 411 TNGGNKLVNINLSDSDQLLSYSNVLGDL 494
                + +N  L D D +  + +V G +
Sbjct: 308 LFSSLETLNAALYDRDDVQDFLSVSGQV 335


>10_08_0914 +
           21535519-21535797,21535961-21536339,21536425-21536568,
           21536681-21536730,21536820-21536877,21536979-21537208
          Length = 379

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 72  ISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWN 233
           I S +G+ +SG+L  L +  + +  G++   + + +E+ S +  L  E+   W+
Sbjct: 198 IQSAVGVRSSGDLMTLTAAAATALRGAATMKQRVQREMRSNASVLPYEKGHSWS 251


>07_03_0378 +
           17446311-17446514,17446814-17446927,17447124-17447242,
           17447595-17447641,17447720-17447820,17450769-17450840,
           17451290-17451403,17451495-17451500,17451501-17451611
          Length = 295

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 214 STERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKT 62
           S E P  A N +F  L   LLE  KL+  GLW+     +  +  ++++ KT
Sbjct: 100 SVESP--APNHTFPSLRCFLLESFKLHQKGLWKSECICDPEVTSVKDLSKT 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,155,825
Number of Sequences: 37544
Number of extensions: 356755
Number of successful extensions: 940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)