Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_P05
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)               34   0.16 
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_3273| Best HMM Match : Neuromodulin (HMM E-Value=1.9)               31   1.1  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.1  
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)                30   2.0  
SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   6.0  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   6.0  
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)                     28   8.0  

>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
          Length = 385

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 618 ISADNIIDFYNLRINSLHALRDFHGPNSLQXXXXXXXXXXXXXXXXXXFVKAYDGSVLVT 797
           +++D I D   L ++SL  +R+ +G +SLQ                  +   Y G  LV 
Sbjct: 164 LTSDGIPDVITLTVSSLKMIRNRYGKDSLQAKAAVQLLKSVLPKLTAGYADLYHGDALVE 223

Query: 798 AVTTD 812
            +TT+
Sbjct: 224 VLTTE 228


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 402  QRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDI-PKVKKQSLQHLKSSVEEDFQFLSELA 578
            QRFT   NK+V + LS + ++  Y   L +LD+  +  +Q    L+  +E       E  
Sbjct: 2053 QRFTGELNKIVLLLLSLTQRMHRYEKTLSELDMSEEADRQQRDILQEKIEYVKNQYEEAC 2112

Query: 579  ALKAVTEK 602
             +K V +K
Sbjct: 2113 KIKEVNDK 2120


>SB_3273| Best HMM Match : Neuromodulin (HMM E-Value=1.9)
          Length = 457

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 369 DTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDL-DIPKVKKQSLQHLKSSV 545
           DT D + HR      +G +   + +L   D++L +  VL  + +I +    SL   ++ V
Sbjct: 32  DTIDPVVHRYEHAVHSGSHSSGSQSLP-GDEVLDWDQVLKRVREIEEAGTCSLGG-ETDV 89

Query: 546 EEDFQFLSELAALKAVTEKVESGAISADNIIDFYN 650
            E+ +   E  ALK V E VESG  S   + D  N
Sbjct: 90  SEESRVTVEEPALKRVKEAVESGDESIFEVDDDTN 124


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
 Frame = +3

Query: 249  DPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQR--FTNG- 419
            DP +   +   VY+  + S  ++  FK + Y + + E+ P TF V+K     R   +NG 
Sbjct: 1251 DPVDPRWSAAVVYVEVLDSNDNAPVFKKQSYVVEMVEHSPTTFTVVKVEATDRDVGSNGR 1310

Query: 420  -GNKLVNINLSDSDQLLSYSNVL---GDLDIPKVKKQSL 524
                +V+ N+  +  + S S V+    D+D  K+++  L
Sbjct: 1311 ISYSIVSGNVDGAFVIDSSSGVIKPAQDIDREKIQRYLL 1349


>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
 Frame = +3

Query: 369 DTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDL-DIPKVKKQSLQHLKSSV 545
           DT D + HR      +G +   + +L   D++L +  VL  + +I +    SL   ++ V
Sbjct: 364 DTIDPVVHRYEHAVHSGSHSSGSQSLP-GDEVLDWDQVLKRVREIEEAGTCSLGG-ETDV 421

Query: 546 EEDFQFLSELAALKAVTEKVESGAISADNIIDFYN 650
            E+ +   E  ALK V E VESG  S   + D  N
Sbjct: 422 SEESRVTVEEPALKRVKEAVESGDESIFEVDDDTN 456


>SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)
          Length = 146

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 384 LKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDF-- 557
           L+HR+   FT  G+  VNIN+SD + +    +VLG+  I + +   L  L+     +   
Sbjct: 53  LRHRMGF-FTKSGD--VNINVSDVNNIAFSRSVLGNPTISRARGYQLHQLEDRAIHELLE 109

Query: 558 QFLSELAALKAVT-EKVESG 614
            +     A + VT E+V SG
Sbjct: 110 HYGGRFNACELVTVERVPSG 129


>SB_48172| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 126 PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPFNTPE 269
           PE  S SGS    + L    FS ++  S +E+  W  LL+TD +N P+
Sbjct: 405 PEMNSSSGSPSCLDVL--SCFSVNVASS-KESKFWCELLVTDKYNAPD 449


>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1870

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 700 ELGPWKSRSACKELIRKL*KSMILSALIAPDSTFSVTAFKAASSLRNWKS 551
           +L P KSR++ KE+  +  +S  + +L  P  T +       SS  NWKS
Sbjct: 317 KLNPQKSRASIKEIEGEHARSNSVVSLDVPQETCNTALVTHGSSPLNWKS 366


>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1273

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 324  FKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 485
            FKS K P ++DE +    D+LK   + +F    +  +N    DSD++ +   +L
Sbjct: 1017 FKSTKNPPLIDELKDFEDDMLKMIQSVKFIEASSPFLNKLKEDSDRIKNKPKLL 1070


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/44 (25%), Positives = 26/44 (59%)
 Frame = -2

Query: 234 HSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYGGCLVR 103
           H+I S++Q  G  +  +  +K  +   W++  ++T ++GG L++
Sbjct: 374 HNIVSTIQCAGNRRSDMNRVKKVKGLDWSEGAISTAEWGGALLK 417


>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
          Length = 1845

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +3

Query: 432  VNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAALKAVTEKVES 611
            V +  +   +LL +  + GD ++PK+  +S ++   + E  F   +E  A   +T+ + +
Sbjct: 1407 VELTTASKSKLLRFIFICGDFNLPKISWESQENTTGAKETAF---AEQLADYFLTQ-LNT 1462

Query: 612  GAISADNIIDFYNL----RINSLHAL 677
              I  DN++D        +IN +H L
Sbjct: 1463 IPIRGDNVLDLVIASDPNQINDIHVL 1488


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,634,776
Number of Sequences: 59808
Number of extensions: 432057
Number of successful extensions: 1292
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)