Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_O19
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 29 0.60
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 26 4.2
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 5.6
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.6
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 25 7.3
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 25 7.3
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 9.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.7
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 9.7
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 474 CMRTGEFFWKHLKYLNTCSTGVFPSSFPQ-LSI-TVTTSMSFGKDAAAT 334
C+ G+ W +++NT + G+FPS+F L I TV S + +A++
Sbjct: 35 CLSIGDGKWWIGRHINTNTQGIFPSNFVHCLDIPTVRPGSSMSRTSASS 83
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 445 ALEVFEHLLYWGISIFFSAALDNSDHVYVFRERRSC 338
+L+ F LL W + A ++ HVY+F + C
Sbjct: 426 SLQYFGQLLVWDVVNVCKADIEREYHVYLFEKILLC 461
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 305 ALRIFYKRNKLSSGMVRPLYI 243
+L FY + L+S +V+PLYI
Sbjct: 3937 SLSTFYSASSLASSVVKPLYI 3957
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -3
Query: 320 DYFHRALRIFYKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFHSNTPESGLSI 165
DY H K+ K S +HR L + P ++HS P S S+
Sbjct: 87 DYHHSTSNTPTKKKKDSFDHASVTSLHRRSLSSNTSTPRKYHSRKPYSEPSV 138
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 281 NKLSSGMVRPLYIHRHVLLLSRLHPS-RFHSNTPESGLS 168
N +++ ++PL +H L S+ HP FH + ES S
Sbjct: 207 NSVAATTLKPLQLHNTPLQTSQEHPKPSFHPSQFESSFS 245
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 353 PKDIDVVTVIESCGKEDGNTPVEQVFKYFKCFQKNSPV 466
PKDI+VV + E N PV + + N+P+
Sbjct: 87 PKDINVVLAFANASGEQYNNPVAEKLLKDAIYNCNTPL 124
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 7.3
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 182 QECLNENGLGEDAIEVIRAGEYRED-EPFQNLVYCAYKKFGALDENNRIISQVAAASFPK 358
++CL+ + L E IE+IR Y+ E F N +C KK GA + + + F
Sbjct: 161 KDCLSADDLDEQHIEIIRNTLYKAYLEDFYN--FC--KKIGACTAD----TMLPILEFEA 212
Query: 359 DIDVVTV-IESCGKE 400
D +T+ I S G E
Sbjct: 213 DRRAITITINSFGTE 227
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 191 LNENGLGEDAIEVIRAGEYREDEPFQNLVYCAYKK 295
+NE G+ D IE + + +E E NLV KK
Sbjct: 299 INECGIKHDGIEGVAIHDQKEKELSSNLVSDVAKK 333
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Frame = -1
Query: 415 WGISIFFSAALDNSD-----HVYVFRERRSCNLTD 326
WG+ I F+ L N D H Y+ R C L D
Sbjct: 2039 WGLLITFTELLKNEDYNFWKHPYIKRNDEICRLFD 2073
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 267 WNGSSSLYSPARITSI 220
WNG S+ YSP + +I
Sbjct: 342 WNGGSNTYSPTALAAI 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,085,493
Number of Sequences: 5004
Number of extensions: 42050
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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