Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O19
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0172 + 1362101-1363708                                           31   0.61 
04_03_0466 - 16243865-16244049,16244084-16244279                       28   4.3  
03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795     28   5.6  
12_01_0667 + 5674322-5674393,5674455-5675159,5676051-5676087,567...    27   7.5  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    27   9.9  
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473...    27   9.9  

>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
 Frame = +2

Query: 137 VSFAPEVAKKLKVLIQECLNENGLGEDAI--EVIRAGEYREDEPFQNLVYCAYKKFGALD 310
           +   P+V     VL   C   +  G   +  ++I +G  R D     ++   Y + G L 
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGR-RPDVTMYTVLIDGYCQCGNLQ 280

Query: 311 ENNRIISQVAAASF-PKDIDVVTVIESCGKEDGNTPVE 421
           +  RI+ ++ AA   P ++    VIE+C KE+   P+E
Sbjct: 281 DAARIMDEMEAARVQPNEVTYSVVIEACCKEE--KPIE 316


>04_03_0466 - 16243865-16244049,16244084-16244279
          Length = 126

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 281 NKLSSGMVRPLYIHRHVLLLSRLHPSRFH-SNTPESGLSI 165
           N L++ MV   Y+HR +  LSR   +R H  N P S + I
Sbjct: 43  NGLTASMVAADYLHRRIAPLSRQDATRTHPDNLPVSVVEI 82


>03_04_0245 + 19317741-19317947,19318895-19318966,19319790-19319795
          Length = 94

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -3

Query: 251 LYIHRHVLLLSRLHPSRFHSNTPESGLSIF*PPP 150
           L I  HVL+L    PSR  S+ P SG S+  P P
Sbjct: 24  LLISTHVLVLVHTSPSR-ESSRPPSGSSVLVPCP 56


>12_01_0667 +
           5674322-5674393,5674455-5675159,5676051-5676087,
           5676238-5676335,5676452-5676475
          Length = 311

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 290 YKRNKLSSGMVRPLYIHRHVLLLSRLHPSRFHSNTPESGLSIF*PPPGR 144
           + R +L +    PL+ H H LL    HP R H +     L    PPP R
Sbjct: 136 FHRKELDAAAAPPLHHHHHQLLGVGAHP-RGHGHHHHHLLVAALPPPTR 183


>06_01_0078 -
           628946-629524,629620-629684,629814-629935,630042-630129,
           630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 212 EDAIEVIRAGEYREDEPFQNLVYCAYKKFGALDENNRIISQVAAASFPKDI 364
           E+AI+++            N +  A+ K G +DE  R+ +Q+  A  P D+
Sbjct: 841 EEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMYNQMEEAGIPADL 891


>01_01_0628 -
           4731052-4731601,4731825-4732782,4733143-4733953,
           4734038-4734241,4734695-4734802,4735930-4736369,
           4736463-4736541
          Length = 1049

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 325 HQSSCSCVFPERHRRGHCYRELRKRRWKYPSRASVQILQVLPEKLACAHATVLVTK*FCN 504
           H S   C  PER       ++L +R  +  S+   Q+ Q++P      H+  +VT+  C+
Sbjct: 741 HSSVEPCRLPERFSHASVVQDLHERVDRTDSQIVSQLQQLMPICCDEVHSIQIVTRMNCS 800


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,220,311
Number of Sequences: 37544
Number of extensions: 265764
Number of successful extensions: 702
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)