Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_O17
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    30   0.38 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.67 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.7  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    27   4.7  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   6.2  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 525  CSSCIVRSTPWLPWRLRRKRTPSVWRSR 608
            C  C  +     PW  R + TPSVW S+
Sbjct: 1499 CPDCCSKEGKLYPWNTRPRSTPSVWLSQ 1526


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 434 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 342
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -2

Query: 393 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 238
           S +   IP+ P T      +  + KNS A + +L  +     +D  S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 410 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 231
           + PS+P + +P+S        +PP R   +S+   S L  +    L +FP P ++  Y  
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216

Query: 230 SD 225
            D
Sbjct: 217 QD 218


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -3

Query: 440 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 276
           S +  D  G  S   P+E+MPL  + +      P  +PG +++  +      L  FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273

Query: 275 LLAF 264
           L+ F
Sbjct: 274 LIPF 277


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 447 ERFGIRPGYEWNSFTLASSGDNAAIP 370
           E+ G R GY+ +S   ASS  N+ IP
Sbjct: 155 EKMGYRGGYQMHSTPWASSPRNSTIP 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,722
Number of Sequences: 5004
Number of extensions: 78156
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)